Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31435

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31430 and BPHYT_RS31435 are separated by 149 nucleotidesBPHYT_RS31435 and BPHYT_RS31440 are separated by 271 nucleotides BPHYT_RS31430: BPHYT_RS31430 - FAD-dependent oxidoreductase, at 2,605,446 to 2,606,771 _RS31430 BPHYT_RS31435: BPHYT_RS31435 - LysR family transcriptional regulator, at 2,606,921 to 2,607,823 _RS31435 BPHYT_RS31440: BPHYT_RS31440 - hypothetical protein, at 2,608,095 to 2,608,340 _RS31440 Position (kb) 2606 2607 2608Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2606.240 kb on - strand, within BPHYT_RS31430at 2606.361 kb on - strand, within BPHYT_RS31430at 2607.827 kb on + strandat 2607.905 kb on + strandat 2607.959 kb on + strandat 2608.009 kb on + strandat 2608.130 kb on + strand, within BPHYT_RS31440at 2608.141 kb on + strand, within BPHYT_RS31440at 2608.366 kb on - strandat 2608.394 kb on + strandat 2608.638 kb on + strandat 2608.647 kb on + strandat 2608.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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2,606,240 - BPHYT_RS31430 0.60 +0.3
2,606,361 - BPHYT_RS31430 0.69 +1.3
2,607,827 + +0.6
2,607,905 + -3.6
2,607,959 + -0.5
2,608,009 + +0.0
2,608,130 + BPHYT_RS31440 0.14 +1.1
2,608,141 + BPHYT_RS31440 0.19 -0.2
2,608,366 - +1.5
2,608,394 + +1.0
2,608,638 + -1.8
2,608,647 + +0.0
2,608,783 - +2.1

Or see this region's nucleotide sequence