Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30820

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30815 and BPHYT_RS30820 are separated by 213 nucleotidesBPHYT_RS30820 and BPHYT_RS30825 are separated by 334 nucleotidesBPHYT_RS30825 and BPHYT_RS30830 are separated by 145 nucleotides BPHYT_RS30815: BPHYT_RS30815 - 2-methylcitrate dehydratase, at 2,469,397 to 2,470,680 _RS30815 BPHYT_RS30820: BPHYT_RS30820 - GntR family transcriptional regulator, at 2,470,894 to 2,471,634 _RS30820 BPHYT_RS30825: BPHYT_RS30825 - extradiol dioxygenase, at 2,471,969 to 2,472,400 _RS30825 BPHYT_RS30830: BPHYT_RS30830 - MFS transporter, at 2,472,546 to 2,473,859 _RS30830 Position (kb) 2470 2471 2472Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2470.216 kb on + strand, within BPHYT_RS30815at 2470.217 kb on - strand, within BPHYT_RS30815at 2470.582 kb on - strandat 2471.127 kb on - strand, within BPHYT_RS30820at 2471.375 kb on + strand, within BPHYT_RS30820at 2471.786 kb on - strandat 2472.032 kb on + strand, within BPHYT_RS30825at 2472.124 kb on + strand, within BPHYT_RS30825at 2472.398 kb on + strandat 2472.431 kb on + strandat 2472.432 kb on - strandat 2472.592 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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2,470,216 + BPHYT_RS30815 0.64 +2.8
2,470,217 - BPHYT_RS30815 0.64 -0.7
2,470,582 - -0.5
2,471,127 - BPHYT_RS30820 0.31 -1.9
2,471,375 + BPHYT_RS30820 0.65 +0.1
2,471,786 - -0.6
2,472,032 + BPHYT_RS30825 0.15 -1.0
2,472,124 + BPHYT_RS30825 0.36 -1.4
2,472,398 + +1.6
2,472,431 + -1.7
2,472,432 - -0.4
2,472,592 + -0.6

Or see this region's nucleotide sequence