Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26750

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26745 and BPHYT_RS26750 are separated by 4 nucleotidesBPHYT_RS26750 and BPHYT_RS26755 are separated by 53 nucleotides BPHYT_RS26745: BPHYT_RS26745 - 2-dehydropantoate 2-reductase, at 1,570,369 to 1,571,352 _RS26745 BPHYT_RS26750: BPHYT_RS26750 - aldolase, at 1,571,357 to 1,572,148 _RS26750 BPHYT_RS26755: BPHYT_RS26755 - aromatic amino acid aminotransferase, at 1,572,202 to 1,573,401 _RS26755 Position (kb) 1571 1572 1573Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1570.370 kb on + strandat 1571.080 kb on + strand, within BPHYT_RS26745at 1572.005 kb on - strand, within BPHYT_RS26750at 1572.015 kb on + strand, within BPHYT_RS26750at 1572.243 kb on - strandat 1572.243 kb on - strandat 1572.243 kb on - strandat 1572.300 kb on - strandat 1572.300 kb on - strandat 1572.380 kb on + strand, within BPHYT_RS26755at 1572.957 kb on - strand, within BPHYT_RS26755at 1572.962 kb on + strand, within BPHYT_RS26755at 1573.034 kb on - strand, within BPHYT_RS26755at 1573.053 kb on - strand, within BPHYT_RS26755

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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1,570,370 + -2.2
1,571,080 + BPHYT_RS26745 0.72 -0.1
1,572,005 - BPHYT_RS26750 0.82 +1.1
1,572,015 + BPHYT_RS26750 0.83 +0.4
1,572,243 - -1.2
1,572,243 - +0.7
1,572,243 - -0.7
1,572,300 - -2.1
1,572,300 - -0.3
1,572,380 + BPHYT_RS26755 0.15 -3.8
1,572,957 - BPHYT_RS26755 0.63 +0.7
1,572,962 + BPHYT_RS26755 0.63 -2.9
1,573,034 - BPHYT_RS26755 0.69 +0.9
1,573,053 - BPHYT_RS26755 0.71 +0.2

Or see this region's nucleotide sequence