Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26105

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26100 and BPHYT_RS26105 are separated by 69 nucleotidesBPHYT_RS26105 and BPHYT_RS26110 overlap by 10 nucleotidesBPHYT_RS26110 and BPHYT_RS26115 overlap by 4 nucleotides BPHYT_RS26100: BPHYT_RS26100 - gamma-glutamyltransferase, at 1,431,124 to 1,432,710 _RS26100 BPHYT_RS26105: BPHYT_RS26105 - hypothetical protein, at 1,432,780 to 1,433,370 _RS26105 BPHYT_RS26110: BPHYT_RS26110 - GntR family transcriptional regulator, at 1,433,361 to 1,434,113 _RS26110 BPHYT_RS26115: BPHYT_RS26115 - polysaccharide deacetylase, at 1,434,110 to 1,435,075 _RS26115 Position (kb) 1432 1433 1434Strain fitness (log2 ratio) -3 -2 -1 0 1at 1431.964 kb on + strand, within BPHYT_RS26100at 1432.299 kb on + strand, within BPHYT_RS26100at 1432.351 kb on + strand, within BPHYT_RS26100at 1432.353 kb on + strand, within BPHYT_RS26100at 1432.354 kb on - strand, within BPHYT_RS26100at 1432.589 kb on + strandat 1432.759 kb on + strandat 1432.847 kb on + strand, within BPHYT_RS26105at 1433.331 kb on - strandat 1433.629 kb on + strand, within BPHYT_RS26110at 1434.157 kb on + strandat 1434.274 kb on - strand, within BPHYT_RS26115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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1,431,964 + BPHYT_RS26100 0.53 -0.0
1,432,299 + BPHYT_RS26100 0.74 +0.7
1,432,351 + BPHYT_RS26100 0.77 +0.7
1,432,353 + BPHYT_RS26100 0.77 +0.6
1,432,354 - BPHYT_RS26100 0.78 -0.3
1,432,589 + -2.1
1,432,759 + -2.7
1,432,847 + BPHYT_RS26105 0.11 +1.0
1,433,331 - +0.3
1,433,629 + BPHYT_RS26110 0.36 -3.0
1,434,157 + -0.5
1,434,274 - BPHYT_RS26115 0.17 +1.2

Or see this region's nucleotide sequence