Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24990

Experiment: L-Lysine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS24980 and BPHYT_RS24985 overlap by 4 nucleotidesBPHYT_RS24985 and BPHYT_RS24990 are separated by 73 nucleotidesBPHYT_RS24990 and BPHYT_RS24995 are separated by 5 nucleotides BPHYT_RS24980: BPHYT_RS24980 - hypothetical protein, at 1,174,392 to 1,174,820 _RS24980 BPHYT_RS24985: BPHYT_RS24985 - membrane protein, at 1,174,817 to 1,175,335 _RS24985 BPHYT_RS24990: BPHYT_RS24990 - hypothetical protein, at 1,175,409 to 1,176,968 _RS24990 BPHYT_RS24995: BPHYT_RS24995 - hypothetical protein, at 1,176,974 to 1,178,122 _RS24995 Position (kb) 1175 1176 1177Strain fitness (log2 ratio) -1 0 1at 1175.379 kb on + strandat 1175.812 kb on + strand, within BPHYT_RS24990at 1176.373 kb on - strand, within BPHYT_RS24990at 1176.373 kb on - strand, within BPHYT_RS24990at 1177.248 kb on - strand, within BPHYT_RS24995at 1177.292 kb on + strand, within BPHYT_RS24995at 1177.536 kb on - strand, within BPHYT_RS24995at 1177.709 kb on - strand, within BPHYT_RS24995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
remove
1,175,379 + -0.9
1,175,812 + BPHYT_RS24990 0.26 -1.3
1,176,373 - BPHYT_RS24990 0.62 -0.3
1,176,373 - BPHYT_RS24990 0.62 -0.2
1,177,248 - BPHYT_RS24995 0.24 +1.2
1,177,292 + BPHYT_RS24995 0.28 +0.5
1,177,536 - BPHYT_RS24995 0.49 -0.7
1,177,709 - BPHYT_RS24995 0.64 -0.8

Or see this region's nucleotide sequence