Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24000

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23990 and BPHYT_RS23995 are separated by 12 nucleotidesBPHYT_RS23995 and BPHYT_RS24000 are separated by 293 nucleotidesBPHYT_RS24000 and BPHYT_RS24005 are separated by 102 nucleotidesBPHYT_RS24005 and BPHYT_RS24010 are separated by 14 nucleotides BPHYT_RS23990: BPHYT_RS23990 - N-hydroxyarylamine O-acetyltransferase, at 948,653 to 949,492 _RS23990 BPHYT_RS23995: BPHYT_RS23995 - isoprenylcysteine carboxyl methyltransferase, at 949,505 to 950,185 _RS23995 BPHYT_RS24000: BPHYT_RS24000 - L-histidine ABC transporter, substrate-binding component (from data), at 950,479 to 951,339 _RS24000 BPHYT_RS24005: BPHYT_RS24005 - L-histidine ABC transporter, permease component 1 (from data), at 951,442 to 952,164 _RS24005 BPHYT_RS24010: BPHYT_RS24010 - L-histidine ABC transporter, permease component 2 (from data), at 952,179 to 952,931 _RS24010 Position (kb) 950 951 952Strain fitness (log2 ratio) -2 -1 0 1 2at 949.901 kb on + strand, within BPHYT_RS23995at 949.901 kb on + strand, within BPHYT_RS23995at 949.943 kb on - strand, within BPHYT_RS23995at 949.989 kb on - strand, within BPHYT_RS23995at 950.078 kb on - strand, within BPHYT_RS23995at 950.141 kb on + strandat 950.728 kb on - strand, within BPHYT_RS24000at 951.121 kb on + strand, within BPHYT_RS24000at 951.125 kb on - strand, within BPHYT_RS24000at 951.436 kb on + strandat 951.491 kb on + strandat 951.622 kb on + strand, within BPHYT_RS24005at 951.622 kb on + strand, within BPHYT_RS24005at 951.791 kb on - strand, within BPHYT_RS24005at 952.039 kb on + strand, within BPHYT_RS24005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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949,901 + BPHYT_RS23995 0.58 +0.3
949,901 + BPHYT_RS23995 0.58 +1.1
949,943 - BPHYT_RS23995 0.64 -1.9
949,989 - BPHYT_RS23995 0.71 -2.2
950,078 - BPHYT_RS23995 0.84 -0.3
950,141 + -0.9
950,728 - BPHYT_RS24000 0.29 +1.2
951,121 + BPHYT_RS24000 0.75 +0.6
951,125 - BPHYT_RS24000 0.75 +0.5
951,436 + +2.7
951,491 + +0.1
951,622 + BPHYT_RS24005 0.25 -1.9
951,622 + BPHYT_RS24005 0.25 +1.0
951,791 - BPHYT_RS24005 0.48 -0.9
952,039 + BPHYT_RS24005 0.83 -1.9

Or see this region's nucleotide sequence