Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22780

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22775 and BPHYT_RS22780 are separated by 10 nucleotides BPHYT_RS22775: BPHYT_RS22775 - sugar ABC transporter permease, at 668,275 to 669,252 _RS22775 BPHYT_RS22780: BPHYT_RS22780 - sugar ABC transporter permease, at 669,263 to 670,114 _RS22780 Position (kb) 669 670 671Strain fitness (log2 ratio) -2 -1 0 1at 668.471 kb on - strand, within BPHYT_RS22775at 668.590 kb on + strand, within BPHYT_RS22775at 668.668 kb on + strand, within BPHYT_RS22775at 668.902 kb on + strand, within BPHYT_RS22775at 669.124 kb on + strand, within BPHYT_RS22775at 669.148 kb on + strand, within BPHYT_RS22775at 669.488 kb on + strand, within BPHYT_RS22780at 669.489 kb on - strand, within BPHYT_RS22780at 670.233 kb on + strandat 670.234 kb on - strandat 670.234 kb on - strandat 670.237 kb on + strandat 670.860 kb on - strandat 671.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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668,471 - BPHYT_RS22775 0.20 +1.7
668,590 + BPHYT_RS22775 0.32 -0.4
668,668 + BPHYT_RS22775 0.40 +1.6
668,902 + BPHYT_RS22775 0.64 -0.7
669,124 + BPHYT_RS22775 0.87 +0.3
669,148 + BPHYT_RS22775 0.89 -1.1
669,488 + BPHYT_RS22780 0.26 +0.2
669,489 - BPHYT_RS22780 0.27 +1.4
670,233 + +1.7
670,234 - +0.4
670,234 - +0.1
670,237 + -0.3
670,860 - -2.5
671,054 + -0.3

Or see this region's nucleotide sequence