Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20860

Experiment: L-Lysine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS20855 and BPHYT_RS20860 are separated by 204 nucleotidesBPHYT_RS20860 and BPHYT_RS20865 are separated by 33 nucleotides BPHYT_RS20855: BPHYT_RS20855 - transcriptional regulator, at 241,250 to 242,158 _RS20855 BPHYT_RS20860: BPHYT_RS20860 - hypothetical protein, at 242,363 to 242,686 _RS20860 BPHYT_RS20865: BPHYT_RS20865 - 2-hydroxyacid dehydrogenase, at 242,720 to 243,685 _RS20865 Position (kb) 242 243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 241.673 kb on + strand, within BPHYT_RS20855at 241.674 kb on - strand, within BPHYT_RS20855at 241.709 kb on + strand, within BPHYT_RS20855at 241.709 kb on + strand, within BPHYT_RS20855at 241.709 kb on + strand, within BPHYT_RS20855at 241.710 kb on - strand, within BPHYT_RS20855at 241.710 kb on - strand, within BPHYT_RS20855at 241.710 kb on - strand, within BPHYT_RS20855at 241.715 kb on + strand, within BPHYT_RS20855at 241.829 kb on - strand, within BPHYT_RS20855at 241.953 kb on + strand, within BPHYT_RS20855at 241.954 kb on - strand, within BPHYT_RS20855at 242.060 kb on + strand, within BPHYT_RS20855at 242.061 kb on - strand, within BPHYT_RS20855at 242.128 kb on + strandat 242.229 kb on + strandat 242.785 kb on - strandat 243.424 kb on + strand, within BPHYT_RS20865at 243.424 kb on + strand, within BPHYT_RS20865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
remove
241,673 + BPHYT_RS20855 0.47 +1.2
241,674 - BPHYT_RS20855 0.47 -2.9
241,709 + BPHYT_RS20855 0.50 +0.0
241,709 + BPHYT_RS20855 0.50 -0.1
241,709 + BPHYT_RS20855 0.50 -0.3
241,710 - BPHYT_RS20855 0.51 -1.7
241,710 - BPHYT_RS20855 0.51 -0.7
241,710 - BPHYT_RS20855 0.51 -1.3
241,715 + BPHYT_RS20855 0.51 -0.1
241,829 - BPHYT_RS20855 0.64 -0.9
241,953 + BPHYT_RS20855 0.77 -0.9
241,954 - BPHYT_RS20855 0.77 +2.4
242,060 + BPHYT_RS20855 0.89 -0.8
242,061 - BPHYT_RS20855 0.89 +0.4
242,128 + -1.6
242,229 + +1.0
242,785 - -1.3
243,424 + BPHYT_RS20865 0.73 -3.8
243,424 + BPHYT_RS20865 0.73 -0.5

Or see this region's nucleotide sequence