Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13840

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13835 and BPHYT_RS13840 overlap by 4 nucleotidesBPHYT_RS13840 and BPHYT_RS13845 are separated by 274 nucleotidesBPHYT_RS13845 and BPHYT_RS13850 overlap by 4 nucleotides BPHYT_RS13835: BPHYT_RS13835 - S-adenosylhomocysteine nucleosidase, at 3,156,806 to 3,157,756 _RS13835 BPHYT_RS13840: BPHYT_RS13840 - DNA-dependent helicase, at 3,157,753 to 3,160,104 _RS13840 BPHYT_RS13845: BPHYT_RS13845 - transposase, at 3,160,379 to 3,160,681 _RS13845 BPHYT_RS13850: BPHYT_RS13850 - transposase, at 3,160,678 to 3,161,514 _RS13850 Position (kb) 3157 3158 3159 3160 3161Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3156.771 kb on + strandat 3156.771 kb on + strandat 3156.771 kb on + strandat 3156.821 kb on - strandat 3156.821 kb on - strandat 3156.858 kb on + strandat 3156.859 kb on - strandat 3157.598 kb on + strand, within BPHYT_RS13835at 3160.136 kb on + strandat 3160.136 kb on + strandat 3160.137 kb on - strandat 3160.137 kb on - strandat 3160.138 kb on + strandat 3160.139 kb on - strandat 3160.139 kb on - strandat 3160.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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3,156,771 + -1.2
3,156,771 + -0.3
3,156,771 + -2.4
3,156,821 - +0.9
3,156,821 - +0.3
3,156,858 + +0.7
3,156,859 - -2.7
3,157,598 + BPHYT_RS13835 0.83 -1.3
3,160,136 + +0.7
3,160,136 + +1.2
3,160,137 - +0.5
3,160,137 - +3.7
3,160,138 + +0.6
3,160,139 - -0.3
3,160,139 - +1.5
3,160,346 - +0.3

Or see this region's nucleotide sequence