Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01600

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01595 and BPHYT_RS01600 are separated by 323 nucleotidesBPHYT_RS01600 and BPHYT_RS01605 overlap by 34 nucleotidesBPHYT_RS01605 and BPHYT_RS01610 are separated by 227 nucleotides BPHYT_RS01595: BPHYT_RS01595 - homoserine O-acetyltransferase, at 361,639 to 362,784 _RS01595 BPHYT_RS01600: BPHYT_RS01600 - dihydroorotate oxidase, at 363,108 to 363,791 _RS01600 BPHYT_RS01605: BPHYT_RS01605 - HAD family hydrolase, at 363,758 to 364,561 _RS01605 BPHYT_RS01610: BPHYT_RS01610 - acetylglutamate kinase, at 364,789 to 365,688 _RS01610 Position (kb) 363 364Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 362.165 kb on + strand, within BPHYT_RS01595at 362.166 kb on - strand, within BPHYT_RS01595at 362.166 kb on - strand, within BPHYT_RS01595at 362.168 kb on + strand, within BPHYT_RS01595at 362.169 kb on - strand, within BPHYT_RS01595at 362.598 kb on - strand, within BPHYT_RS01595at 362.656 kb on - strand, within BPHYT_RS01595at 362.656 kb on - strand, within BPHYT_RS01595at 362.678 kb on + strandat 362.799 kb on - strandat 362.882 kb on + strandat 362.883 kb on - strandat 362.884 kb on + strandat 362.884 kb on + strandat 362.884 kb on + strandat 362.885 kb on - strandat 362.950 kb on + strandat 363.043 kb on - strandat 363.043 kb on - strandat 363.109 kb on + strandat 363.178 kb on + strand, within BPHYT_RS01600at 363.178 kb on + strand, within BPHYT_RS01600at 363.179 kb on - strand, within BPHYT_RS01600at 363.179 kb on - strand, within BPHYT_RS01600at 363.200 kb on + strand, within BPHYT_RS01600at 363.200 kb on + strand, within BPHYT_RS01600at 363.200 kb on + strand, within BPHYT_RS01600at 363.201 kb on - strand, within BPHYT_RS01600at 363.201 kb on - strand, within BPHYT_RS01600at 363.202 kb on + strand, within BPHYT_RS01600at 363.202 kb on + strand, within BPHYT_RS01600at 363.203 kb on - strand, within BPHYT_RS01600at 363.759 kb on + strandat 363.759 kb on + strandat 363.845 kb on + strand, within BPHYT_RS01605at 363.872 kb on - strand, within BPHYT_RS01605at 363.879 kb on + strand, within BPHYT_RS01605at 363.879 kb on + strand, within BPHYT_RS01605at 363.879 kb on + strand, within BPHYT_RS01605at 363.879 kb on + strand, within BPHYT_RS01605at 363.879 kb on + strand, within BPHYT_RS01605at 363.880 kb on - strand, within BPHYT_RS01605at 363.880 kb on - strand, within BPHYT_RS01605at 364.111 kb on + strand, within BPHYT_RS01605at 364.112 kb on - strand, within BPHYT_RS01605at 364.179 kb on + strand, within BPHYT_RS01605at 364.180 kb on - strand, within BPHYT_RS01605at 364.180 kb on - strand, within BPHYT_RS01605at 364.356 kb on + strand, within BPHYT_RS01605at 364.356 kb on + strand, within BPHYT_RS01605at 364.426 kb on - strand, within BPHYT_RS01605at 364.426 kb on - strand, within BPHYT_RS01605at 364.710 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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362,165 + BPHYT_RS01595 0.46 -3.7
362,166 - BPHYT_RS01595 0.46 -2.1
362,166 - BPHYT_RS01595 0.46 -1.3
362,168 + BPHYT_RS01595 0.46 -5.2
362,169 - BPHYT_RS01595 0.46 -3.4
362,598 - BPHYT_RS01595 0.84 -2.3
362,656 - BPHYT_RS01595 0.89 -4.8
362,656 - BPHYT_RS01595 0.89 -2.0
362,678 + -6.3
362,799 - -1.5
362,882 + -3.6
362,883 - +1.9
362,884 + +0.7
362,884 + +0.5
362,884 + -3.0
362,885 - -0.5
362,950 + -4.0
363,043 - -1.3
363,043 - -2.8
363,109 + +0.3
363,178 + BPHYT_RS01600 0.10 +1.0
363,178 + BPHYT_RS01600 0.10 +0.1
363,179 - BPHYT_RS01600 0.10 +0.3
363,179 - BPHYT_RS01600 0.10 -0.1
363,200 + BPHYT_RS01600 0.13 +0.0
363,200 + BPHYT_RS01600 0.13 -2.8
363,200 + BPHYT_RS01600 0.13 +1.5
363,201 - BPHYT_RS01600 0.14 -0.8
363,201 - BPHYT_RS01600 0.14 -0.4
363,202 + BPHYT_RS01600 0.14 -1.0
363,202 + BPHYT_RS01600 0.14 -0.1
363,203 - BPHYT_RS01600 0.14 +0.1
363,759 + -1.3
363,759 + +0.0
363,845 + BPHYT_RS01605 0.11 -0.1
363,872 - BPHYT_RS01605 0.14 +1.2
363,879 + BPHYT_RS01605 0.15 +0.3
363,879 + BPHYT_RS01605 0.15 +0.4
363,879 + BPHYT_RS01605 0.15 -0.1
363,879 + BPHYT_RS01605 0.15 +0.4
363,879 + BPHYT_RS01605 0.15 -0.2
363,880 - BPHYT_RS01605 0.15 +0.9
363,880 - BPHYT_RS01605 0.15 +0.2
364,111 + BPHYT_RS01605 0.44 -0.9
364,112 - BPHYT_RS01605 0.44 -0.6
364,179 + BPHYT_RS01605 0.52 -0.2
364,180 - BPHYT_RS01605 0.52 -1.4
364,180 - BPHYT_RS01605 0.52 +1.5
364,356 + BPHYT_RS01605 0.74 +0.1
364,356 + BPHYT_RS01605 0.74 +0.5
364,426 - BPHYT_RS01605 0.83 +0.0
364,426 - BPHYT_RS01605 0.83 +0.7
364,710 + -0.8

Or see this region's nucleotide sequence