Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01360

Experiment: L-Lysine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS01355 and BPHYT_RS01360 are separated by 863 nucleotides BPHYT_RS01355: BPHYT_RS01355 - hypothetical protein, at 309,631 to 309,993 _RS01355 BPHYT_RS01360: BPHYT_RS01360 - hypothetical protein, at 310,857 to 311,438 _RS01360 Position (kb) 310 311 312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 309.965 kb on + strandat 309.965 kb on + strandat 309.965 kb on + strandat 309.991 kb on + strandat 310.045 kb on + strandat 310.045 kb on + strandat 310.046 kb on - strandat 310.046 kb on - strandat 310.080 kb on + strandat 310.155 kb on + strandat 310.155 kb on + strandat 310.156 kb on - strandat 310.156 kb on - strandat 310.156 kb on - strandat 310.306 kb on + strandat 310.353 kb on + strandat 310.353 kb on + strandat 310.353 kb on + strandat 310.374 kb on - strandat 310.374 kb on - strandat 310.400 kb on - strandat 310.435 kb on - strandat 310.465 kb on - strandat 310.465 kb on - strandat 310.525 kb on + strandat 310.525 kb on + strandat 310.526 kb on - strandat 310.526 kb on - strandat 310.526 kb on - strandat 310.529 kb on + strandat 310.530 kb on - strandat 310.530 kb on - strandat 310.530 kb on - strandat 310.554 kb on - strandat 310.560 kb on + strandat 310.560 kb on + strandat 310.561 kb on - strandat 310.561 kb on - strandat 310.742 kb on + strandat 310.776 kb on + strandat 310.776 kb on + strandat 310.783 kb on - strandat 310.790 kb on + strandat 310.825 kb on + strandat 310.825 kb on + strandat 310.837 kb on + strandat 310.838 kb on - strandat 310.838 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strandat 311.012 kb on + strand, within BPHYT_RS01360at 311.012 kb on + strand, within BPHYT_RS01360at 311.013 kb on - strand, within BPHYT_RS01360at 311.053 kb on + strand, within BPHYT_RS01360at 311.053 kb on + strand, within BPHYT_RS01360at 311.053 kb on + strand, within BPHYT_RS01360at 311.053 kb on + strand, within BPHYT_RS01360at 311.053 kb on + strand, within BPHYT_RS01360at 311.053 kb on + strand, within BPHYT_RS01360at 311.053 kb on + strand, within BPHYT_RS01360at 311.054 kb on - strand, within BPHYT_RS01360at 311.054 kb on - strand, within BPHYT_RS01360at 311.054 kb on - strand, within BPHYT_RS01360at 311.054 kb on - strand, within BPHYT_RS01360at 311.054 kb on - strand, within BPHYT_RS01360at 311.054 kb on - strand, within BPHYT_RS01360at 311.057 kb on + strand, within BPHYT_RS01360at 311.057 kb on + strand, within BPHYT_RS01360at 311.112 kb on + strand, within BPHYT_RS01360at 311.112 kb on + strand, within BPHYT_RS01360at 311.112 kb on + strand, within BPHYT_RS01360at 311.113 kb on - strand, within BPHYT_RS01360at 311.113 kb on - strand, within BPHYT_RS01360at 311.113 kb on - strand, within BPHYT_RS01360at 311.113 kb on - strand, within BPHYT_RS01360at 311.191 kb on - strand, within BPHYT_RS01360at 311.321 kb on + strand, within BPHYT_RS01360at 311.322 kb on - strand, within BPHYT_RS01360at 311.350 kb on + strand, within BPHYT_RS01360at 311.368 kb on + strand, within BPHYT_RS01360at 311.369 kb on - strand, within BPHYT_RS01360at 311.483 kb on + strandat 311.484 kb on - strandat 311.484 kb on - strandat 311.484 kb on - strandat 311.528 kb on + strandat 311.528 kb on + strandat 311.529 kb on - strandat 311.547 kb on - strandat 311.566 kb on + strandat 311.566 kb on + strandat 311.566 kb on + strandat 311.566 kb on + strandat 311.566 kb on + strandat 311.567 kb on - strandat 311.589 kb on + strandat 311.589 kb on + strandat 311.600 kb on + strandat 311.600 kb on + strandat 311.600 kb on + strandat 311.600 kb on + strandat 311.601 kb on - strandat 311.850 kb on - strandat 311.850 kb on - strandat 311.850 kb on - strandat 311.850 kb on - strandat 311.947 kb on + strandat 311.947 kb on + strandat 311.947 kb on + strandat 311.947 kb on + strandat 311.947 kb on + strandat 311.947 kb on + strandat 311.948 kb on - strandat 311.948 kb on - strandat 311.948 kb on - strandat 311.948 kb on - strandat 311.961 kb on + strandat 312.014 kb on + strandat 312.109 kb on - strandat 312.109 kb on - strandat 312.109 kb on - strandat 312.111 kb on + strandat 312.133 kb on + strandat 312.134 kb on - strandat 312.136 kb on + strandat 312.142 kb on + strandat 312.143 kb on - strandat 312.143 kb on - strandat 312.143 kb on - strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.148 kb on + strandat 312.149 kb on - strandat 312.149 kb on - strandat 312.149 kb on - strandat 312.149 kb on - strandat 312.149 kb on - strandat 312.149 kb on - strandat 312.149 kb on - strandat 312.149 kb on - strandat 312.151 kb on - strandat 312.180 kb on + strandat 312.180 kb on + strandat 312.181 kb on - strandat 312.238 kb on + strandat 312.239 kb on - strandat 312.239 kb on - strandat 312.436 kb on + strandat 312.436 kb on + strandat 312.437 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
remove
309,965 + -0.7
309,965 + -2.5
309,965 + -1.1
309,991 + -1.0
310,045 + -0.1
310,045 + -0.3
310,046 - -3.4
310,046 - -2.6
310,080 + -0.6
310,155 + -0.5
310,155 + -0.4
310,156 - -1.7
310,156 - +0.5
310,156 - +0.5
310,306 + -0.3
310,353 + -0.7
310,353 + -0.4
310,353 + +0.8
310,374 - +0.2
310,374 - +0.5
310,400 - +0.4
310,435 - -0.1
310,465 - +0.3
310,465 - +0.5
310,525 + -0.5
310,525 + +0.4
310,526 - -0.1
310,526 - -0.9
310,526 - -0.4
310,529 + -1.8
310,530 - -0.2
310,530 - +0.0
310,530 - +0.1
310,554 - -0.1
310,560 + +0.9
310,560 + -1.5
310,561 - +0.1
310,561 - -0.5
310,742 + +0.6
310,776 + -2.4
310,776 + +0.4
310,783 - +0.6
310,790 + +1.0
310,825 + -1.6
310,825 + -0.2
310,837 + +0.0
310,838 - +1.1
310,838 - -0.9
310,881 - -0.9
310,881 - +0.4
310,881 - +0.2
311,012 + BPHYT_RS01360 0.27 +0.7
311,012 + BPHYT_RS01360 0.27 -0.0
311,013 - BPHYT_RS01360 0.27 +0.6
311,053 + BPHYT_RS01360 0.34 -2.2
311,053 + BPHYT_RS01360 0.34 +0.3
311,053 + BPHYT_RS01360 0.34 -0.5
311,053 + BPHYT_RS01360 0.34 +0.4
311,053 + BPHYT_RS01360 0.34 -1.3
311,053 + BPHYT_RS01360 0.34 -0.0
311,053 + BPHYT_RS01360 0.34 +0.0
311,054 - BPHYT_RS01360 0.34 -0.4
311,054 - BPHYT_RS01360 0.34 -0.8
311,054 - BPHYT_RS01360 0.34 +0.1
311,054 - BPHYT_RS01360 0.34 -1.5
311,054 - BPHYT_RS01360 0.34 -0.2
311,054 - BPHYT_RS01360 0.34 +0.3
311,057 + BPHYT_RS01360 0.34 -0.0
311,057 + BPHYT_RS01360 0.34 -1.7
311,112 + BPHYT_RS01360 0.44 -2.6
311,112 + BPHYT_RS01360 0.44 -2.7
311,112 + BPHYT_RS01360 0.44 -0.6
311,113 - BPHYT_RS01360 0.44 -1.2
311,113 - BPHYT_RS01360 0.44 -0.4
311,113 - BPHYT_RS01360 0.44 -1.5
311,113 - BPHYT_RS01360 0.44 -0.9
311,191 - BPHYT_RS01360 0.57 +0.3
311,321 + BPHYT_RS01360 0.80 -0.3
311,322 - BPHYT_RS01360 0.80 -0.7
311,350 + BPHYT_RS01360 0.85 +0.3
311,368 + BPHYT_RS01360 0.88 +0.5
311,369 - BPHYT_RS01360 0.88 -0.1
311,483 + +0.5
311,484 - -0.8
311,484 - +0.1
311,484 - -0.1
311,528 + -1.0
311,528 + -1.2
311,529 - +0.7
311,547 - +0.3
311,566 + +0.8
311,566 + +0.1
311,566 + +0.9
311,566 + +0.1
311,566 + +0.1
311,567 - -0.4
311,589 + +0.1
311,589 + +0.1
311,600 + +0.7
311,600 + -0.9
311,600 + -1.7
311,600 + -1.1
311,601 - -0.4
311,850 - -0.9
311,850 - +0.1
311,850 - +0.6
311,850 - -0.0
311,947 + -2.4
311,947 + -0.2
311,947 + -0.8
311,947 + -3.6
311,947 + +0.4
311,947 + +1.1
311,948 - +2.1
311,948 - -3.4
311,948 - -0.4
311,948 - +0.3
311,961 + -2.5
312,014 + -0.7
312,109 - -0.2
312,109 - -0.4
312,109 - -0.2
312,111 + +1.6
312,133 + +1.2
312,134 - +0.2
312,136 + +1.5
312,142 + -0.9
312,143 - +0.5
312,143 - +0.6
312,143 - -0.6
312,148 + -0.3
312,148 + -1.3
312,148 + +0.5
312,148 + -1.1
312,148 + -4.6
312,148 + -1.0
312,148 + +0.2
312,148 + +0.3
312,148 + -1.5
312,148 + +0.5
312,149 - +0.3
312,149 - +0.1
312,149 - +1.3
312,149 - +0.3
312,149 - -1.9
312,149 - -0.0
312,149 - +0.5
312,149 - -0.0
312,151 - -2.9
312,180 + -0.6
312,180 + +0.1
312,181 - +0.1
312,238 + +0.3
312,239 - +0.2
312,239 - -0.6
312,436 + +0.7
312,436 + -0.0
312,437 - +0.2

Or see this region's nucleotide sequence