Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23080 and AZOBR_RS23085 overlap by 4 nucleotides AZOBR_RS23085 and AZOBR_RS23090 are separated by 192 nucleotides
AZOBR_RS23080: AZOBR_RS23080 - ribulose 1 5-bisphosphate carboxylase, at 194,572 to 195,843
_RS23080
AZOBR_RS23085: AZOBR_RS23085 - type III effector Hrp-dependent outer protein, at 195,840 to 197,147
_RS23085
AZOBR_RS23090: AZOBR_RS23090 - Crp/Fnr family transcription regulator, at 197,340 to 198,071
_RS23090
Position (kb) 195
196
197
198 Strain fitness (log2 ratio) -1
0
1 at 195.455 kb on - strand, within AZOBR_RS23080 at 196.107 kb on + strand, within AZOBR_RS23085 at 196.107 kb on + strand, within AZOBR_RS23085 at 196.108 kb on - strand, within AZOBR_RS23085 at 196.108 kb on - strand, within AZOBR_RS23085 at 196.402 kb on - strand, within AZOBR_RS23085 at 196.750 kb on + strand, within AZOBR_RS23085 at 196.941 kb on - strand, within AZOBR_RS23085 at 197.204 kb on + strand at 197.205 kb on - strand at 197.214 kb on + strand at 197.214 kb on + strand at 197.214 kb on + strand at 197.214 kb on + strand at 197.236 kb on + strand at 197.237 kb on - strand at 197.237 kb on - strand at 197.258 kb on + strand at 197.273 kb on - strand at 197.273 kb on - strand at 197.665 kb on - strand, within AZOBR_RS23090 at 197.670 kb on + strand, within AZOBR_RS23090 at 197.671 kb on - strand, within AZOBR_RS23090
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 195,455 - AZOBR_RS23080 0.69 -0.8 196,107 + AZOBR_RS23085 0.20 +0.6 196,107 + AZOBR_RS23085 0.20 +0.5 196,108 - AZOBR_RS23085 0.20 +1.2 196,108 - AZOBR_RS23085 0.20 +0.1 196,402 - AZOBR_RS23085 0.43 -0.1 196,750 + AZOBR_RS23085 0.70 +0.8 196,941 - AZOBR_RS23085 0.84 +0.4 197,204 + +0.9 197,205 - +0.4 197,214 + +0.6 197,214 + +0.4 197,214 + -0.1 197,214 + +1.2 197,236 + +1.1 197,237 - +1.2 197,237 - +0.6 197,258 + -0.1 197,273 - +0.0 197,273 - +0.9 197,665 - AZOBR_RS23090 0.44 -0.9 197,670 + AZOBR_RS23090 0.45 -0.7 197,671 - AZOBR_RS23090 0.45 -0.4
Or see this region's nucleotide sequence