Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16440

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS16440 and AZOBR_RS16445 are separated by 86 nucleotidesAZOBR_RS16445 and AZOBR_RS16450 are separated by 82 nucleotides AZOBR_RS16440: AZOBR_RS16440 - hypothetical protein, at 438,077 to 439,282 _RS16440 AZOBR_RS16445: AZOBR_RS16445 - chemotaxis protein CheY, at 439,369 to 440,067 _RS16445 AZOBR_RS16450: AZOBR_RS16450 - ATPase, at 440,150 to 441,478 _RS16450 Position (kb) 438 439 440Strain fitness (log2 ratio) -2 -1 0 1at 437.098 kb on + strandat 437.099 kb on - strandat 437.504 kb on + strandat 437.504 kb on + strandat 437.504 kb on + strandat 437.504 kb on + strandat 437.675 kb on + strandat 437.676 kb on - strandat 437.676 kb on - strandat 437.691 kb on - strandat 437.691 kb on - strandat 438.528 kb on - strand, within AZOBR_RS16440at 438.650 kb on + strand, within AZOBR_RS16440at 439.061 kb on + strand, within AZOBR_RS16440at 440.105 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
437,098 + +1.3
437,099 - +0.4
437,504 + +0.8
437,504 + -2.6
437,504 + -0.1
437,504 + +0.3
437,675 + +0.4
437,676 - +1.6
437,676 - +1.1
437,691 - +1.3
437,691 - +0.2
438,528 - AZOBR_RS16440 0.37 +1.4
438,650 + AZOBR_RS16440 0.48 +0.5
439,061 + AZOBR_RS16440 0.82 +0.3
440,105 - +0.5

Or see this region's nucleotide sequence