Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18020

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
3,966,379	+		AO353_18015	0.38	-0.3
3,966,379	+		AO353_18015	0.38	-1.8
3,966,379	+		AO353_18015	0.38	-0.5
3,966,379	+		AO353_18015	0.38	-2.2
3,966,379	+		AO353_18015	0.38	-0.7
3,966,379	+		AO353_18015	0.38	-0.4
3,966,380	-		AO353_18015	0.38	+0.1
3,966,380	-		AO353_18015	0.38	-1.5
3,966,380	-		AO353_18015	0.38	-1.0
3,966,380	-		AO353_18015	0.38	+0.4
3,966,380	-		AO353_18015	0.38	+0.7
3,966,437	+		AO353_18015	0.45	-0.5
3,966,437	+		AO353_18015	0.45	-1.0
3,966,437	+		AO353_18015	0.45	-0.5
3,966,437	+		AO353_18015	0.45	-0.0
3,966,438	-				-0.0
3,966,438	-		AO353_18015	0.45	+0.5
3,966,438	-		AO353_18015	0.45	+0.9
3,966,487	+		AO353_18015	0.50	-1.2
3,966,488	-		AO353_18015	0.51	+0.2
3,966,493	+		AO353_18015	0.51	-0.5
3,966,493	+		AO353_18015	0.51	+2.3
3,966,493	+		AO353_18015	0.51	-0.8
3,966,494	-		AO353_18015	0.51	-1.6
3,966,494	-		AO353_18015	0.51	+0.5
3,966,494	-		AO353_18015	0.51	-0.8
3,966,494	-		AO353_18015	0.51	+0.1
3,966,494	-		AO353_18015	0.51	-1.8
3,966,494	-		AO353_18015	0.51	+0.0
3,966,625	+		AO353_18015	0.67	+0.3
3,966,625	+		AO353_18015	0.67	+0.6
3,966,625	+		AO353_18015	0.67	-0.0
3,966,625	+		AO353_18015	0.67	-3.0
3,966,626	-		AO353_18015	0.67	+0.7
3,966,626	-		AO353_18015	0.67	-0.9
3,966,626	-		AO353_18015	0.67	+0.2
3,966,626	-		AO353_18015	0.67	+1.7
3,966,626	-		AO353_18015	0.67	-0.8
3,966,626	-		AO353_18015	0.67	+0.6
3,966,626	-		AO353_18015	0.67	-1.0
3,966,691	+		AO353_18015	0.75	+1.2
3,966,692	-		AO353_18015	0.75	+2.0
3,966,697	+		AO353_18015	0.75	-0.4
3,966,880	+				+1.0
3,966,880	+				+0.5
3,966,880	+				+0.4
3,966,880	+				+0.9
3,966,880	+				+0.3
3,966,880	+				+1.1
3,966,880	+				-1.6
3,966,880	+				-0.9
3,966,880	+				+1.4
3,966,880	+				+1.3
3,966,880	+				-0.1
3,966,881	-				-0.9
3,966,881	-				-0.6
3,966,881	-				-0.8
3,966,881	-				-0.8
3,966,881	-				-0.2
3,966,881	-				+0.2
3,966,881	-				-0.7
3,966,881	-				-0.2
3,966,881	-				-1.7
3,966,909	+				+0.2
3,966,910	-				+2.5
3,966,958	+				+2.1
3,966,959	-				+2.2
3,966,964	+				+0.4
3,966,964	+				+1.2
3,966,964	+				+0.0
3,966,964	+				-0.0
3,966,964	+				+0.2
3,966,965	-				-0.7
3,966,965	-				+1.0
3,966,974	+				+1.0
3,966,974	+				+0.6
3,966,975	-				-0.6
3,966,975	-				+0.3
3,966,975	-				+1.2
3,966,977	-				-0.1
3,967,013	+				+0.2
3,967,013	+				+0.7
3,967,014	-				-0.5
3,967,078	+				+0.2
3,967,079	-				-0.9
3,967,079	-				+0.9
3,967,079	-				-0.5
3,967,121	+				+0.4
3,967,121	+				-1.7
3,967,122	-				+0.8
3,967,149	+				+0.2
3,967,150	-				-1.1
3,967,203	+				+0.2
3,967,204	-				-0.6
3,967,204	-				+0.5
3,967,227	+				+0.5
3,967,227	+				+0.7
3,967,227	+				+0.1
3,967,227	+				+0.3
3,967,227	+				-0.9
3,967,228	-				+0.6
3,967,228	-				-2.0
3,967,228	-				-0.3
3,967,580	-		AO353_18020	0.43	+0.2
3,967,729	+		AO353_18020	0.58	+0.6
3,967,729	+		AO353_18020	0.58	+0.1
3,967,729	+		AO353_18020	0.58	+0.4
3,967,729	+		AO353_18020	0.58	+0.2
3,967,730	-		AO353_18020	0.58	+0.3
3,967,730	-		AO353_18020	0.58	+0.1
3,967,731	+		AO353_18020	0.58	-1.5
3,967,731	+		AO353_18020	0.58	-1.0
3,967,731	+		AO353_18020	0.58	+0.5
3,967,731	+		AO353_18020	0.58	+0.0
3,967,731	+		AO353_18020	0.58	+0.0
3,967,731	+		AO353_18020	0.58	-0.2
3,967,731	+		AO353_18020	0.58	+0.3
3,967,732	-		AO353_18020	0.58	-0.1
3,967,732	-		AO353_18020	0.58	-0.3
3,967,732	-		AO353_18020	0.58	+0.9
3,967,732	-		AO353_18020	0.58	-1.0
3,967,732	-		AO353_18020	0.58	-0.6
3,967,797	+		AO353_18020	0.65	-1.1
3,967,853	+		AO353_18020	0.71	+0.5
3,967,853	+		AO353_18020	0.71	+0.9
3,967,854	-		AO353_18020	0.71	+1.1
3,967,854	-		AO353_18020	0.71	+1.1
3,967,892	+		AO353_18020	0.75	+0.9
3,968,081	-				+1.5
3,968,081	-				-0.3
3,968,113	-				+0.4
3,968,113	-				-0.4
3,968,134	+				-0.6
3,968,134	+				+1.2
3,968,134	+				-0.3
3,968,234	+				-1.1
3,968,234	+				+0.3
3,968,234	+				+0.3
3,968,234	+				-0.6
3,968,235	-				-0.3
3,968,235	-				-1.1
3,968,235	-				-0.5
3,968,235	-				-0.3
3,968,238	+				-0.2
3,968,238	+				-0.6
3,968,238	+				-0.8
3,968,239	-				-1.2
3,968,239	-				+0.3
3,968,239	-				-2.9
3,968,239	-				-1.3
3,968,239	-				-1.6
3,968,262	+				-0.2
3,968,324	+				+0.4
3,968,324	+				+0.3
3,968,324	+				-1.6
3,968,324	+				-0.4
3,968,324	+				-1.3
3,968,325	-				-0.1
3,968,325	-				-0.5
3,968,325	-				+1.0
3,968,325	-				-0.8
3,968,325	-				-0.4
3,968,325	-				-1.2
3,968,369	-				+0.1
3,968,410	+				-0.8
3,968,410	+				-1.0
3,968,410	+				-0.9
3,968,411	-				+0.4
3,968,437	+				+0.0
3,968,438	-				+0.0
3,968,438	-				+0.3
3,968,478	+				-0.7
3,968,478	+				+2.0
3,968,478	+				-0.3
3,968,479	-				+0.2
3,968,492	+				-0.7
3,968,492	+				+0.5
3,968,493	-				-0.1
3,968,493	-				-0.5
3,968,493	-				-0.2
3,968,493	-				+1.1
3,968,493	-				-1.1
3,968,496	+				-0.5
3,968,496	+				+0.2
3,968,496	+				-0.1
3,968,540	+				-0.6
3,968,540	+				-0.1
3,968,540	+				+0.0
3,968,541	-				-0.2
3,968,541	-				-1.5
3,968,541	-				-2.2
3,968,541	-				-2.1
3,968,541	-				-0.9
3,968,581	+				-0.9
3,968,581	+				+0.2
3,968,582	-				+2.5
3,968,646	-				-0.2
3,968,652	-				-0.3
3,968,689	+				-1.4
3,968,689	+				+1.3
3,968,767	+				-0.9
3,968,789	+				-0.6
3,968,789	+				+0.0
3,968,810	+				-0.7
3,968,866	+				+0.2
3,968,866	+				+1.1
3,968,866	+				-0.3
3,968,866	+				+0.3
3,968,867	-				-0.3
3,969,007	-				-0.5
3,969,024	+				-0.8
3,969,040	-				+0.5
3,969,069	-				-1.5