Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15465

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
3,418,083	+		AO353_15455	0.82	-1.0
3,418,084	-		AO353_15455	0.82	-1.9
3,418,084	-		AO353_15455	0.82	-2.5
3,418,160	+		AO353_15455	0.86	-1.5
3,418,160	+		AO353_15455	0.86	-2.4
3,418,160	+		AO353_15455	0.86	-2.0
3,418,161	-		AO353_15455	0.86	+1.1
3,418,161	-		AO353_15455	0.86	-0.6
3,418,161	-		AO353_15455	0.86	-2.8
3,418,265	-				-1.2
3,418,265	-				-2.2
3,418,292	+				-1.3
3,418,292	+				-1.5
3,418,292	+				-0.9
3,418,293	-				-3.5
3,418,293	-				-1.5
3,418,293	-				-2.1
3,418,328	+				-0.9
3,418,328	+				-2.0
3,418,328	+				-2.2
3,418,328	+				-0.6
3,418,328	+				-2.9
3,418,328	+				-0.3
3,418,328	+				-2.0
3,418,328	+				-2.2
3,418,328	+				-1.6
3,418,328	+				-1.3
3,418,329	-				-2.3
3,418,329	-				-0.8
3,418,329	-				-1.0
3,418,329	-				-2.6
3,418,329	-				-0.7
3,418,329	-				-1.4
3,418,329	-				-2.8
3,418,445	+				-2.0
3,418,445	+				-2.3
3,418,445	+				-1.3
3,418,445	+				-1.9
3,418,446	-				-0.9
3,418,446	-				-1.1
3,418,446	-				+0.0
3,418,446	-				+0.4
3,418,446	-				+0.1
3,418,461	+				-0.9
3,418,461	+				-2.0
3,418,462	-				-1.3
3,418,462	-				-1.4
3,418,462	-				-2.5
3,418,539	+		AO353_15460	0.14	-0.9
3,418,557	-		AO353_15460	0.17	-1.8
3,418,602	-		AO353_15460	0.24	-1.8
3,418,608	+		AO353_15460	0.25	-1.1
3,418,608	+		AO353_15460	0.25	-1.3
3,418,614	+		AO353_15460	0.26	-2.8
3,418,664	+		AO353_15460	0.34	-0.9
3,418,665	-		AO353_15460	0.34	-2.4
3,418,665	-		AO353_15460	0.34	-1.3
3,418,665	-		AO353_15460	0.34	-1.6
3,418,665	-		AO353_15460	0.34	-2.0
3,418,665	-		AO353_15460	0.34	-2.5
3,418,710	-		AO353_15460	0.41	-0.3
3,418,710	-		AO353_15460	0.41	-0.9
3,418,710	-		AO353_15460	0.41	-0.8
3,418,710	-		AO353_15460	0.41	-1.6
3,418,825	+		AO353_15460	0.60	-0.3
3,418,826	-		AO353_15460	0.60	-1.1
3,418,946	+		AO353_15460	0.79	-1.5
3,418,946	+		AO353_15460	0.79	-1.4
3,418,946	+		AO353_15460	0.79	-1.8
3,418,946	+		AO353_15460	0.79	-1.8
3,418,946	+		AO353_15460	0.79	-2.4
3,418,946	+		AO353_15460	0.79	-0.9
3,418,946	+		AO353_15460	0.79	-2.8
3,418,946	+		AO353_15460	0.79	-3.1
3,418,947	-		AO353_15460	0.79	-1.9
3,418,947	-		AO353_15460	0.79	-1.5
3,418,947	-		AO353_15460	0.79	-1.8
3,418,947	-		AO353_15460	0.79	-1.1
3,418,947	-		AO353_15460	0.79	-2.8
3,418,947	-		AO353_15460	0.79	-0.6
3,418,947	-		AO353_15460	0.79	-2.1
3,418,947	-		AO353_15460	0.79	-0.6
3,418,947	-		AO353_15460	0.79	-1.6
3,418,947	-		AO353_15460	0.79	-2.5
3,418,947	-		AO353_15460	0.79	-0.2
3,418,947	-		AO353_15460	0.79	-2.0
3,418,947	-		AO353_15460	0.79	-1.3
3,418,947	-		AO353_15460	0.79	+1.3
3,419,028	+				-1.8
3,419,028	+				-1.6
3,419,029	-				-0.9
3,419,029	-				-1.8
3,419,029	-				-1.0
3,419,029	-				-2.1
3,419,058	-				-1.1
3,419,075	+				-0.2
3,419,075	+				-1.6
3,419,075	+				-1.9
3,419,075	+				-0.9
3,419,075	+				-2.9
3,419,076	-				-2.8
3,419,076	-				-0.3
3,419,076	-				-0.9
3,419,138	+		AO353_15465	0.18	+0.1
3,419,139	-		AO353_15465	0.18	-1.3
3,419,198	+		AO353_15465	0.35	-2.1
3,419,198	+		AO353_15465	0.35	-2.1
3,419,198	+		AO353_15465	0.35	-2.0
3,419,198	+		AO353_15465	0.35	-2.1
3,419,198	+		AO353_15465	0.35	-1.6
3,419,198	+		AO353_15465	0.35	-1.1
3,419,199	-		AO353_15465	0.36	-3.3
3,419,199	-		AO353_15465	0.36	-1.3
3,419,199	-		AO353_15465	0.36	-0.9
3,419,199	-		AO353_15465	0.36	-2.1
3,419,199	-		AO353_15465	0.36	-1.9
3,419,199	-		AO353_15465	0.36	-0.9
3,419,199	-		AO353_15465	0.36	-1.1
3,419,199	-		AO353_15465	0.36	-0.9
3,419,199	-		AO353_15465	0.36	-0.8
3,419,235	+		AO353_15465	0.46	-1.3
3,419,236	-		AO353_15465	0.47	-3.2
3,419,276	+		AO353_15465	0.58	-2.7
3,419,276	+		AO353_15465	0.58	-0.3
3,419,276	+		AO353_15465	0.58	-1.1
3,419,276	+		AO353_15465	0.58	-0.9
3,419,277	-		AO353_15465	0.59	-2.0
3,419,277	-		AO353_15465	0.59	-0.9
3,419,277	-		AO353_15465	0.59	-2.2
3,419,277	-		AO353_15465	0.59	-1.5
3,419,277	-		AO353_15465	0.59	-1.3
3,419,277	-		AO353_15465	0.59	-1.5
3,419,277	-		AO353_15465	0.59	-1.9
3,419,312	-		AO353_15465	0.69	-2.0
3,419,384	+				-1.6
3,419,384	+				-1.3
3,419,384	+				-0.8
3,419,384	+				-2.3
3,419,384	+				-0.6
3,419,384	+				-1.9
3,419,384	+				-0.6
3,419,384	+				-0.1
3,419,384	+				-3.2
3,419,384	+				-2.3
3,419,385	-				-1.8
3,419,385	-				-1.1
3,419,385	-				-2.2
3,419,385	-				-1.3
3,419,385	-				-1.3
3,419,385	-				-2.0
3,419,385	-				-1.2
3,419,385	-				-1.8
3,419,385	-				-3.0
3,419,385	-				-2.2
3,419,385	-				-1.1
3,419,436	-				-1.2
3,419,446	-				-1.5
3,419,692	+		AO353_15470	0.30	-1.3
3,419,693	-		AO353_15470	0.30	-2.0
3,419,693	-		AO353_15470	0.30	-1.6
3,419,693	-		AO353_15470	0.30	-1.6
3,419,785	+		AO353_15470	0.40	-2.2
3,419,785	+		AO353_15470	0.40	-2.0
3,419,785	+		AO353_15470	0.40	-2.1
3,419,785	+		AO353_15470	0.40	-2.7
3,419,785	+		AO353_15470	0.40	-1.8
3,419,785	+		AO353_15470	0.40	-1.3
3,419,785	+		AO353_15470	0.40	-2.8
3,419,785	+		AO353_15470	0.40	-2.5
3,419,785	+		AO353_15470	0.40	-2.1
3,419,785	+		AO353_15470	0.40	-1.2
3,419,785	+		AO353_15470	0.40	-1.6
3,419,786	-		AO353_15470	0.40	-2.3
3,419,786	-		AO353_15470	0.40	-2.5
3,419,786	-		AO353_15470	0.40	-3.5
3,419,786	-		AO353_15470	0.40	-2.3
3,419,786	-		AO353_15470	0.40	-0.5
3,419,786	-		AO353_15470	0.40	-2.4
3,419,786	-		AO353_15470	0.40	-1.8
3,419,786	-		AO353_15470	0.40	-1.5
3,419,786	-		AO353_15470	0.40	-2.0
3,419,786	-		AO353_15470	0.40	-1.8
3,419,786	-		AO353_15470	0.40	-2.5
3,419,786	-		AO353_15470	0.40	-2.1
3,419,797	+		AO353_15470	0.42	-0.2
3,419,797	+		AO353_15470	0.42	-1.6
3,419,797	+		AO353_15470	0.42	-1.1
3,419,798	-		AO353_15470	0.42	+0.4
3,419,806	+		AO353_15470	0.43	-2.8
3,419,806	+		AO353_15470	0.43	-0.9
3,419,806	+		AO353_15470	0.43	-2.2
3,419,878	+		AO353_15470	0.51	-1.1
3,419,895	+		AO353_15470	0.53	-0.7
3,419,895	+		AO353_15470	0.53	-1.9
3,419,896	-		AO353_15470	0.53	-2.8
3,419,896	-		AO353_15470	0.53	-2.6
3,419,896	-		AO353_15470	0.53	-1.3
3,419,896	-		AO353_15470	0.53	-2.2
3,419,960	-		AO353_15470	0.60	-2.0
3,419,960	-		AO353_15470	0.60	-1.1
3,419,960	-		AO353_15470	0.60	-2.4
3,419,960	-				-0.3
3,419,989	+		AO353_15470	0.63	-1.5
3,419,989	+		AO353_15470	0.63	-2.5
3,419,989	+		AO353_15470	0.63	-0.5
3,419,990	-		AO353_15470	0.63	-0.3
3,420,061	+		AO353_15470	0.71	-0.8
3,420,061	+		AO353_15470	0.71	-2.1
3,420,061	+		AO353_15470	0.71	-0.9
3,420,061	+		AO353_15470	0.71	-1.1
3,420,061	+		AO353_15470	0.71	-2.0
3,420,061	+		AO353_15470	0.71	-1.8
3,420,061	+		AO353_15470	0.71	+0.5
3,420,062	-		AO353_15470	0.71	-1.5
3,420,062	-		AO353_15470	0.71	+0.4
3,420,062	-		AO353_15470	0.71	-1.5
3,420,062	-		AO353_15470	0.71	-2.0
3,420,110	-		AO353_15470	0.77	-1.6
3,420,124	+		AO353_15470	0.78	-0.9
3,420,124	+		AO353_15470	0.78	+0.1
3,420,124	+		AO353_15470	0.78	-2.0
3,420,125	-		AO353_15470	0.78	-1.1
3,420,125	-		AO353_15470	0.78	-2.7
3,420,125	-		AO353_15470	0.78	-2.5
3,420,154	+		AO353_15470	0.82	-2.2
3,420,154	+		AO353_15470	0.82	-0.6
3,420,154	+		AO353_15470	0.82	-2.4
3,420,154	+		AO353_15470	0.82	-0.3
3,420,154	+		AO353_15470	0.82	-2.6
3,420,154	+		AO353_15470	0.82	+0.5
3,420,154	+		AO353_15470	0.82	-1.5
3,420,154	+		AO353_15470	0.82	-1.1
3,420,154	+		AO353_15470	0.82	-1.2
3,420,154	+		AO353_15470	0.82	-1.9
3,420,154	+		AO353_15470	0.82	-0.3
3,420,155	-		AO353_15470	0.82	-0.6
3,420,155	-		AO353_15470	0.82	-1.8
3,420,155	-		AO353_15470	0.82	-2.5
3,420,155	-		AO353_15470	0.82	-1.3
3,420,155	-		AO353_15470	0.82	-2.8
3,420,155	-		AO353_15470	0.82	-1.1
3,420,155	-		AO353_15470	0.82	-1.9
3,420,155	-		AO353_15470	0.82	-1.5
3,420,163	+		AO353_15470	0.83	-0.4
3,420,163	+		AO353_15470	0.83	+0.4
3,420,163	+		AO353_15470	0.83	-2.2
3,420,163	+		AO353_15470	0.83	-2.3
3,420,163	+		AO353_15470	0.83	-2.4
3,420,163	+		AO353_15470	0.83	-0.6
3,420,163	+		AO353_15470	0.83	-1.8
3,420,163	+		AO353_15470	0.83	-1.6
3,420,163	+		AO353_15470	0.83	-0.6
3,420,163	+		AO353_15470	0.83	-0.5
3,420,163	+		AO353_15470	0.83	-1.5
3,420,163	+		AO353_15470	0.83	-1.3
3,420,163	+		AO353_15470	0.83	+0.1
3,420,163	+		AO353_15470	0.83	-2.4
3,420,164	-		AO353_15470	0.83	-1.9
3,420,164	-		AO353_15470	0.83	-1.9
3,420,164	-		AO353_15470	0.83	-1.6
3,420,164	-		AO353_15470	0.83	-1.8
3,420,164	-		AO353_15470	0.83	-1.5
3,420,164	-		AO353_15470	0.83	-0.9
3,420,164	-		AO353_15470	0.83	-2.4
3,420,164	-		AO353_15470	0.83	-1.6
3,420,164	-		AO353_15470	0.83	-1.9
3,420,164	-		AO353_15470	0.83	-1.1
3,420,164	-		AO353_15470	0.83	-0.6
3,420,181	+		AO353_15470	0.85	-1.6
3,420,181	+		AO353_15470	0.85	-1.1
3,420,213	+		AO353_15470	0.88	-1.8
3,420,213	+		AO353_15470	0.88	-1.5
3,420,213	+		AO353_15470	0.88	-0.9
3,420,213	+		AO353_15470	0.88	-2.2
3,420,213	+		AO353_15470	0.88	-0.5
3,420,213	+		AO353_15470	0.88	-1.9
3,420,213	+		AO353_15470	0.88	-3.5
3,420,214	-		AO353_15470	0.89	-1.1
3,420,214	-		AO353_15470	0.89	-0.9
3,420,214	-		AO353_15470	0.89	-1.4
3,420,214	-		AO353_15470	0.89	-0.9
3,420,214	-		AO353_15470	0.89	-1.1
3,420,214	-		AO353_15470	0.89	-1.5
3,420,214	-		AO353_15470	0.89	-2.3
3,420,214	-		AO353_15470	0.89	-0.3
3,420,304	+				-0.4
3,420,304	+				+0.6
3,420,305	-				-0.3
3,420,305	-				+1.7
3,420,305	-				-0.3
3,420,305	-				+0.1
3,420,313	+				+0.2
3,420,314	-				-2.5
3,420,329	+				+0.3
3,420,329	+				+0.9
3,420,329	+				-0.5
3,420,329	+				-2.0
3,420,329	+				-0.1
3,420,329	+				+0.0
3,420,329	+				+0.5
3,420,330	-				+0.7
3,420,383	+				-0.2
3,420,383	+				+1.3
3,420,384	-				+0.8
3,420,405	+				+1.0
3,420,405	+				-0.1
3,420,405	+				+0.6
3,420,405	+				+1.9
3,420,406	-				-0.6
3,420,406	-				-0.7