Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20525

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20520 and ABZR86_RS20525 are separated by 233 nucleotidesABZR86_RS20525 and ABZR86_RS20530 are separated by 186 nucleotides ABZR86_RS20520: ABZR86_RS20520 - TonB-dependent receptor, at 48,172 to 51,048 _RS20520 ABZR86_RS20525: ABZR86_RS20525 - Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein, at 51,282 to 52,385 _RS20525 ABZR86_RS20530: ABZR86_RS20530 - YccS family putative transporter, at 52,572 to 54,725 _RS20530 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 50.306 kb on - strand, within ABZR86_RS20520at 50.413 kb on + strand, within ABZR86_RS20520at 50.413 kb on + strand, within ABZR86_RS20520at 50.470 kb on - strand, within ABZR86_RS20520at 50.476 kb on + strand, within ABZR86_RS20520at 50.476 kb on + strand, within ABZR86_RS20520at 50.596 kb on + strand, within ABZR86_RS20520at 50.596 kb on + strand, within ABZR86_RS20520at 50.596 kb on + strand, within ABZR86_RS20520at 50.597 kb on - strand, within ABZR86_RS20520at 50.597 kb on - strand, within ABZR86_RS20520at 50.597 kb on - strand, within ABZR86_RS20520at 50.597 kb on - strand, within ABZR86_RS20520at 50.597 kb on - strand, within ABZR86_RS20520at 50.597 kb on - strand, within ABZR86_RS20520at 50.597 kb on - strand, within ABZR86_RS20520at 50.674 kb on + strand, within ABZR86_RS20520at 50.674 kb on + strand, within ABZR86_RS20520at 50.674 kb on + strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.675 kb on - strand, within ABZR86_RS20520at 50.680 kb on + strand, within ABZR86_RS20520at 50.762 kb on - strandat 50.854 kb on + strandat 50.854 kb on + strandat 50.855 kb on - strandat 50.855 kb on - strandat 50.956 kb on + strandat 50.991 kb on - strandat 50.999 kb on - strandat 51.016 kb on + strandat 51.019 kb on + strandat 51.153 kb on + strandat 51.154 kb on - strandat 51.165 kb on + strandat 51.166 kb on - strandat 51.198 kb on + strandat 51.199 kb on - strandat 51.420 kb on + strand, within ABZR86_RS20525at 51.477 kb on + strand, within ABZR86_RS20525at 51.607 kb on - strand, within ABZR86_RS20525at 51.651 kb on + strand, within ABZR86_RS20525at 51.652 kb on - strand, within ABZR86_RS20525at 51.798 kb on + strand, within ABZR86_RS20525at 51.799 kb on - strand, within ABZR86_RS20525at 51.804 kb on + strand, within ABZR86_RS20525at 51.805 kb on - strand, within ABZR86_RS20525at 51.805 kb on - strand, within ABZR86_RS20525at 51.957 kb on + strand, within ABZR86_RS20525at 51.957 kb on + strand, within ABZR86_RS20525at 51.958 kb on - strand, within ABZR86_RS20525at 51.958 kb on - strand, within ABZR86_RS20525at 51.978 kb on + strand, within ABZR86_RS20525at 51.979 kb on - strand, within ABZR86_RS20525at 52.117 kb on - strand, within ABZR86_RS20525at 52.117 kb on - strand, within ABZR86_RS20525at 52.129 kb on - strand, within ABZR86_RS20525at 52.180 kb on - strand, within ABZR86_RS20525at 52.272 kb on + strand, within ABZR86_RS20525at 52.272 kb on + strand, within ABZR86_RS20525at 52.273 kb on - strand, within ABZR86_RS20525at 52.273 kb on - strand, within ABZR86_RS20525at 52.273 kb on - strand, within ABZR86_RS20525at 52.273 kb on - strand, within ABZR86_RS20525at 52.274 kb on + strand, within ABZR86_RS20525at 52.275 kb on - strandat 52.403 kb on + strandat 52.404 kb on - strandat 52.559 kb on + strandat 52.559 kb on + strandat 52.559 kb on + strandat 52.559 kb on + strandat 52.560 kb on - strandat 52.560 kb on - strandat 52.560 kb on - strandat 52.602 kb on - strandat 52.680 kb on + strandat 52.680 kb on + strandat 52.680 kb on + strandat 52.681 kb on - strandat 52.681 kb on - strandat 52.681 kb on - strandat 52.810 kb on - strand, within ABZR86_RS20530at 52.963 kb on - strand, within ABZR86_RS20530at 52.963 kb on - strand, within ABZR86_RS20530at 53.328 kb on + strand, within ABZR86_RS20530at 53.328 kb on + strand, within ABZR86_RS20530at 53.328 kb on + strand, within ABZR86_RS20530at 53.329 kb on - strand, within ABZR86_RS20530at 53.373 kb on + strand, within ABZR86_RS20530

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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50,306 - ABZR86_RS20520 0.74 +0.1
50,413 + ABZR86_RS20520 0.78 +1.2
50,413 + ABZR86_RS20520 0.78 -0.5
50,470 - ABZR86_RS20520 0.80 -0.6
50,476 + ABZR86_RS20520 0.80 -0.0
50,476 + ABZR86_RS20520 0.80 -0.6
50,596 + ABZR86_RS20520 0.84 -0.3
50,596 + ABZR86_RS20520 0.84 -0.1
50,596 + ABZR86_RS20520 0.84 -0.7
50,597 - ABZR86_RS20520 0.84 +0.8
50,597 - ABZR86_RS20520 0.84 +0.1
50,597 - ABZR86_RS20520 0.84 +1.5
50,597 - ABZR86_RS20520 0.84 +0.2
50,597 - ABZR86_RS20520 0.84 -0.4
50,597 - ABZR86_RS20520 0.84 -0.5
50,597 - ABZR86_RS20520 0.84 +0.1
50,674 + ABZR86_RS20520 0.87 +0.5
50,674 + ABZR86_RS20520 0.87 -0.1
50,674 + ABZR86_RS20520 0.87 -0.2
50,675 - ABZR86_RS20520 0.87 +0.4
50,675 - ABZR86_RS20520 0.87 +0.1
50,675 - ABZR86_RS20520 0.87 +0.0
50,675 - ABZR86_RS20520 0.87 -0.2
50,675 - ABZR86_RS20520 0.87 -0.7
50,675 - ABZR86_RS20520 0.87 -1.1
50,675 - ABZR86_RS20520 0.87 -0.2
50,675 - ABZR86_RS20520 0.87 +0.4
50,675 - ABZR86_RS20520 0.87 +0.3
50,680 + ABZR86_RS20520 0.87 +0.3
50,762 - -0.1
50,854 + +0.0
50,854 + +0.5
50,855 - +0.4
50,855 - +0.1
50,956 + +0.3
50,991 - +0.6
50,999 - +0.9
51,016 + -1.4
51,019 + -0.1
51,153 + -0.0
51,154 - +0.3
51,165 + +0.1
51,166 - -0.6
51,198 + -0.5
51,199 - -0.8
51,420 + ABZR86_RS20525 0.12 +0.7
51,477 + ABZR86_RS20525 0.18 +0.1
51,607 - ABZR86_RS20525 0.29 +0.0
51,651 + ABZR86_RS20525 0.33 -1.2
51,652 - ABZR86_RS20525 0.34 -1.8
51,798 + ABZR86_RS20525 0.47 -0.2
51,799 - ABZR86_RS20525 0.47 +0.3
51,804 + ABZR86_RS20525 0.47 -0.1
51,805 - ABZR86_RS20525 0.47 -0.2
51,805 - ABZR86_RS20525 0.47 -0.9
51,957 + ABZR86_RS20525 0.61 +0.3
51,957 + ABZR86_RS20525 0.61 -1.1
51,958 - ABZR86_RS20525 0.61 -0.8
51,958 - ABZR86_RS20525 0.61 -0.3
51,978 + ABZR86_RS20525 0.63 -0.9
51,979 - ABZR86_RS20525 0.63 -0.3
52,117 - ABZR86_RS20525 0.76 -0.3
52,117 - ABZR86_RS20525 0.76 -1.3
52,129 - ABZR86_RS20525 0.77 -0.9
52,180 - ABZR86_RS20525 0.81 -0.6
52,272 + ABZR86_RS20525 0.90 -0.2
52,272 + ABZR86_RS20525 0.90 +0.7
52,273 - ABZR86_RS20525 0.90 +1.5
52,273 - ABZR86_RS20525 0.90 -0.3
52,273 - ABZR86_RS20525 0.90 -0.0
52,273 - ABZR86_RS20525 0.90 -0.1
52,274 + ABZR86_RS20525 0.90 -1.1
52,275 - -0.8
52,403 + -0.6
52,404 - -0.7
52,559 + -0.1
52,559 + +1.0
52,559 + -1.1
52,559 + -0.3
52,560 - +0.2
52,560 - -0.7
52,560 - -0.4
52,602 - -0.4
52,680 + -0.1
52,680 + -0.3
52,680 + -0.8
52,681 - +0.1
52,681 - -0.2
52,681 - +1.3
52,810 - ABZR86_RS20530 0.11 -0.9
52,963 - ABZR86_RS20530 0.18 -0.0
52,963 - ABZR86_RS20530 0.18 +0.8
53,328 + ABZR86_RS20530 0.35 -0.3
53,328 + ABZR86_RS20530 0.35 +0.1
53,328 + ABZR86_RS20530 0.35 -0.3
53,329 - ABZR86_RS20530 0.35 +0.1
53,373 + ABZR86_RS20530 0.37 -0.4

Or see this region's nucleotide sequence