Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20475 and ABZR86_RS20480 overlap by 4 nucleotides ABZR86_RS20480 and ABZR86_RS20485 overlap by 8 nucleotides ABZR86_RS20485 and ABZR86_RS20490 overlap by 4 nucleotides ABZR86_RS20490 and ABZR86_RS20495 are separated by 1 nucleotides
ABZR86_RS20475: ABZR86_RS20475 - FAD-dependent oxidoreductase, at 34,937 to 36,043
_RS20475
ABZR86_RS20480: ABZR86_RS20480 - (2Fe-2S)-binding protein, at 36,040 to 36,285
_RS20480
ABZR86_RS20485: ABZR86_RS20485 - FAD/NAD(P)-binding oxidoreductase, at 36,278 to 37,564
_RS20485
ABZR86_RS20490: ABZR86_RS20490 - dihydrodipicolinate synthase family protein, at 37,561 to 38,466
_RS20490
ABZR86_RS20495: ABZR86_RS20495 - aldehyde dehydrogenase family protein, at 38,468 to 40,069
_RS20495
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1 at 35.432 kb on + strand, within ABZR86_RS20475 at 35.432 kb on + strand, within ABZR86_RS20475 at 35.432 kb on + strand, within ABZR86_RS20475 at 35.433 kb on - strand, within ABZR86_RS20475 at 35.433 kb on - strand, within ABZR86_RS20475 at 37.891 kb on + strand, within ABZR86_RS20490 at 37.892 kb on - strand, within ABZR86_RS20490 at 37.892 kb on - strand, within ABZR86_RS20490 at 37.897 kb on + strand, within ABZR86_RS20490 at 37.972 kb on + strand, within ABZR86_RS20490 at 37.972 kb on + strand, within ABZR86_RS20490 at 37.973 kb on - strand, within ABZR86_RS20490
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 35,432 + ABZR86_RS20475 0.45 +0.0 35,432 + ABZR86_RS20475 0.45 -0.1 35,432 + ABZR86_RS20475 0.45 +0.2 35,433 - ABZR86_RS20475 0.45 -0.7 35,433 - ABZR86_RS20475 0.45 -0.0 37,891 + ABZR86_RS20490 0.36 -0.7 37,892 - ABZR86_RS20490 0.37 -1.1 37,892 - ABZR86_RS20490 0.37 +0.5 37,897 + ABZR86_RS20490 0.37 +0.2 37,972 + ABZR86_RS20490 0.45 -0.4 37,972 + ABZR86_RS20490 0.45 +0.5 37,973 - ABZR86_RS20490 0.45 +0.4
Or see this region's nucleotide sequence