Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19955 and ABZR86_RS19960 are separated by 18 nucleotides ABZR86_RS19960 and ABZR86_RS19965 are separated by 394 nucleotides ABZR86_RS19965 and ABZR86_RS19970 are separated by 72 nucleotides ABZR86_RS19970 and ABZR86_RS19975 are separated by 11 nucleotides
ABZR86_RS19955: ABZR86_RS19955 - type II toxin-antitoxin system HicB family antitoxin, at 486,719 to 487,147
_RS19955
ABZR86_RS19960: ABZR86_RS19960 - type II toxin-antitoxin system HicA family toxin, at 487,166 to 487,342
_RS19960
ABZR86_RS19965: ABZR86_RS19965 - tRNA-Phe, at 487,737 to 487,812
_RS19965
ABZR86_RS19970: ABZR86_RS19970 - oxidative damage protection protein, at 487,885 to 488,163
_RS19970
ABZR86_RS19975: ABZR86_RS19975 - A/G-specific adenine glycosylase, at 488,175 to 489,221
_RS19975
Position (kb) 487
488
489 Strain fitness (log2 ratio) -1
0
1 at 487.111 kb on + strand at 487.112 kb on - strand at 487.112 kb on - strand at 487.112 kb on - strand at 487.112 kb on - strand at 487.152 kb on - strand at 487.152 kb on - strand at 487.244 kb on - strand, within ABZR86_RS19960 at 487.267 kb on + strand, within ABZR86_RS19960 at 487.267 kb on + strand, within ABZR86_RS19960 at 487.267 kb on + strand, within ABZR86_RS19960 at 487.267 kb on + strand, within ABZR86_RS19960 at 487.267 kb on + strand, within ABZR86_RS19960 at 487.267 kb on + strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.268 kb on - strand, within ABZR86_RS19960 at 487.401 kb on + strand at 487.455 kb on + strand at 487.455 kb on + strand at 487.455 kb on + strand at 487.455 kb on + strand at 487.455 kb on + strand at 487.455 kb on + strand at 487.455 kb on + strand at 487.455 kb on + strand at 487.455 kb on + strand at 487.456 kb on - strand at 487.456 kb on - strand at 487.456 kb on - strand at 487.456 kb on - strand at 487.456 kb on - strand at 487.456 kb on - strand at 487.456 kb on - strand at 487.625 kb on + strand at 487.625 kb on + strand at 487.713 kb on + strand at 487.713 kb on + strand at 487.714 kb on - strand at 487.910 kb on + strand at 487.910 kb on + strand at 487.910 kb on + strand at 487.910 kb on + strand at 487.910 kb on + strand at 487.911 kb on - strand at 487.911 kb on - strand at 487.911 kb on - strand at 487.911 kb on - strand at 487.911 kb on - strand at 488.006 kb on + strand, within ABZR86_RS19970 at 488.072 kb on + strand, within ABZR86_RS19970 at 488.072 kb on + strand, within ABZR86_RS19970 at 488.072 kb on + strand, within ABZR86_RS19970 at 488.073 kb on - strand, within ABZR86_RS19970 at 488.073 kb on - strand, within ABZR86_RS19970 at 488.177 kb on - strand at 488.556 kb on + strand, within ABZR86_RS19975 at 488.556 kb on + strand, within ABZR86_RS19975 at 488.675 kb on - strand, within ABZR86_RS19975 at 488.699 kb on + strand, within ABZR86_RS19975 at 488.699 kb on + strand, within ABZR86_RS19975 at 488.699 kb on + strand, within ABZR86_RS19975 at 488.700 kb on - strand, within ABZR86_RS19975 at 488.700 kb on - strand, within ABZR86_RS19975 at 488.700 kb on - strand, within ABZR86_RS19975 at 488.700 kb on - strand, within ABZR86_RS19975 at 488.700 kb on - strand, within ABZR86_RS19975 at 488.701 kb on + strand, within ABZR86_RS19975 at 488.701 kb on + strand, within ABZR86_RS19975 at 488.702 kb on - strand, within ABZR86_RS19975 at 488.702 kb on - strand, within ABZR86_RS19975 at 488.702 kb on - strand, within ABZR86_RS19975 at 488.702 kb on - strand, within ABZR86_RS19975 at 488.966 kb on - strand, within ABZR86_RS19975 at 488.966 kb on - strand, within ABZR86_RS19975 at 488.966 kb on - strand, within ABZR86_RS19975 at 488.968 kb on + strand, within ABZR86_RS19975 at 488.968 kb on + strand, within ABZR86_RS19975 at 488.968 kb on + strand, within ABZR86_RS19975 at 488.969 kb on - strand, within ABZR86_RS19975 at 488.969 kb on - strand, within ABZR86_RS19975 at 488.969 kb on - strand, within ABZR86_RS19975 at 489.062 kb on - strand, within ABZR86_RS19975
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 487,111 + +0.4 487,112 - -1.7 487,112 - -1.1 487,112 - +0.0 487,112 - +0.4 487,152 - -1.0 487,152 - -0.4 487,244 - ABZR86_RS19960 0.44 +0.2 487,267 + ABZR86_RS19960 0.57 -0.3 487,267 + ABZR86_RS19960 0.57 -0.3 487,267 + ABZR86_RS19960 0.57 -0.3 487,267 + ABZR86_RS19960 0.57 -0.1 487,267 + ABZR86_RS19960 0.57 -0.7 487,267 + ABZR86_RS19960 0.57 -0.2 487,268 - ABZR86_RS19960 0.58 +0.3 487,268 - ABZR86_RS19960 0.58 -0.0 487,268 - ABZR86_RS19960 0.58 -0.4 487,268 - ABZR86_RS19960 0.58 +0.1 487,268 - ABZR86_RS19960 0.58 +0.2 487,268 - ABZR86_RS19960 0.58 -0.1 487,268 - ABZR86_RS19960 0.58 +0.2 487,268 - ABZR86_RS19960 0.58 -0.2 487,268 - ABZR86_RS19960 0.58 -0.1 487,268 - ABZR86_RS19960 0.58 +0.2 487,401 + +0.4 487,455 + +0.0 487,455 + +0.0 487,455 + -0.4 487,455 + -0.5 487,455 + -0.7 487,455 + -0.2 487,455 + -0.4 487,455 + -0.3 487,455 + -1.1 487,456 - -0.4 487,456 - +0.1 487,456 - +0.4 487,456 - -0.5 487,456 - +1.0 487,456 - -0.5 487,456 - +0.5 487,625 + +0.8 487,625 + +0.2 487,713 + -0.4 487,713 + -0.1 487,714 - -1.2 487,910 + -0.1 487,910 + +0.5 487,910 + -1.2 487,910 + -0.4 487,910 + +0.8 487,911 - -0.3 487,911 - -1.3 487,911 - -0.2 487,911 - +0.0 487,911 - -0.3 488,006 + ABZR86_RS19970 0.43 +0.7 488,072 + ABZR86_RS19970 0.67 +0.9 488,072 + ABZR86_RS19970 0.67 +1.4 488,072 + ABZR86_RS19970 0.67 -1.1 488,073 - ABZR86_RS19970 0.67 +0.6 488,073 - ABZR86_RS19970 0.67 +0.7 488,177 - -0.3 488,556 + ABZR86_RS19975 0.36 -0.1 488,556 + ABZR86_RS19975 0.36 +1.0 488,675 - ABZR86_RS19975 0.48 -0.8 488,699 + ABZR86_RS19975 0.50 +0.2 488,699 + ABZR86_RS19975 0.50 -1.4 488,699 + ABZR86_RS19975 0.50 +0.1 488,700 - ABZR86_RS19975 0.50 +0.4 488,700 - ABZR86_RS19975 0.50 -0.5 488,700 - ABZR86_RS19975 0.50 -0.3 488,700 - ABZR86_RS19975 0.50 +0.0 488,700 - ABZR86_RS19975 0.50 -0.8 488,701 + ABZR86_RS19975 0.50 -0.5 488,701 + ABZR86_RS19975 0.50 +0.9 488,702 - ABZR86_RS19975 0.50 -0.9 488,702 - ABZR86_RS19975 0.50 +1.0 488,702 - ABZR86_RS19975 0.50 -0.5 488,702 - ABZR86_RS19975 0.50 -0.8 488,966 - ABZR86_RS19975 0.76 +0.1 488,966 - ABZR86_RS19975 0.76 +0.1 488,966 - ABZR86_RS19975 0.76 +1.0 488,968 + ABZR86_RS19975 0.76 -0.3 488,968 + ABZR86_RS19975 0.76 +0.6 488,968 + ABZR86_RS19975 0.76 +0.3 488,969 - ABZR86_RS19975 0.76 -1.5 488,969 - ABZR86_RS19975 0.76 +0.6 488,969 - ABZR86_RS19975 0.76 -0.2 489,062 - ABZR86_RS19975 0.85 -0.2
Or see this region's nucleotide sequence