Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19940 and ABZR86_RS19945 are separated by 390 nucleotides ABZR86_RS19945 and ABZR86_RS19950 are separated by 347 nucleotides ABZR86_RS19950 and ABZR86_RS19955 are separated by 55 nucleotides
ABZR86_RS19940: ABZR86_RS19940 - M28 family metallopeptidase, at 483,599 to 485,251
_RS19940
ABZR86_RS19945: ABZR86_RS19945 - PepSY domain-containing protein, at 485,642 to 486,070
_RS19945
ABZR86_RS19950: ABZR86_RS19950 - hypothetical protein, at 486,418 to 486,663
_RS19950
ABZR86_RS19955: ABZR86_RS19955 - type II toxin-antitoxin system HicB family antitoxin, at 486,719 to 487,147
_RS19955
Position (kb) 485
486
487 Strain fitness (log2 ratio) -1
0
1
2 at 484.677 kb on + strand, within ABZR86_RS19940 at 484.677 kb on + strand, within ABZR86_RS19940 at 484.677 kb on + strand, within ABZR86_RS19940 at 484.678 kb on - strand, within ABZR86_RS19940 at 484.683 kb on + strand, within ABZR86_RS19940 at 484.684 kb on - strand, within ABZR86_RS19940 at 484.684 kb on - strand, within ABZR86_RS19940 at 484.684 kb on - strand, within ABZR86_RS19940 at 484.684 kb on - strand, within ABZR86_RS19940 at 484.684 kb on - strand, within ABZR86_RS19940 at 484.684 kb on - strand, within ABZR86_RS19940 at 484.699 kb on - strand, within ABZR86_RS19940 at 484.699 kb on - strand, within ABZR86_RS19940 at 484.699 kb on - strand, within ABZR86_RS19940 at 484.699 kb on - strand, within ABZR86_RS19940 at 484.699 kb on - strand, within ABZR86_RS19940 at 484.701 kb on + strand, within ABZR86_RS19940 at 484.701 kb on + strand, within ABZR86_RS19940 at 484.701 kb on + strand, within ABZR86_RS19940 at 484.701 kb on + strand, within ABZR86_RS19940 at 484.701 kb on + strand, within ABZR86_RS19940 at 484.702 kb on - strand, within ABZR86_RS19940 at 484.702 kb on - strand, within ABZR86_RS19940 at 484.702 kb on - strand, within ABZR86_RS19940 at 484.790 kb on + strand, within ABZR86_RS19940 at 484.790 kb on + strand, within ABZR86_RS19940 at 484.790 kb on + strand, within ABZR86_RS19940 at 484.940 kb on - strand, within ABZR86_RS19940 at 485.064 kb on + strand, within ABZR86_RS19940 at 485.065 kb on - strand, within ABZR86_RS19940 at 485.079 kb on + strand, within ABZR86_RS19940 at 485.080 kb on - strand, within ABZR86_RS19940 at 485.258 kb on + strand at 485.258 kb on + strand at 485.258 kb on + strand at 485.285 kb on + strand at 485.286 kb on - strand at 485.413 kb on + strand at 485.413 kb on + strand at 485.566 kb on + strand at 485.566 kb on + strand at 485.567 kb on - strand at 485.567 kb on - strand at 485.570 kb on + strand at 485.570 kb on + strand at 485.571 kb on - strand at 485.571 kb on - strand at 485.571 kb on - strand at 485.571 kb on - strand at 485.571 kb on - strand at 485.571 kb on - strand at 485.571 kb on - strand at 485.571 kb on - strand at 485.643 kb on + strand at 485.766 kb on + strand, within ABZR86_RS19945 at 485.767 kb on - strand, within ABZR86_RS19945 at 485.944 kb on - strand, within ABZR86_RS19945 at 486.111 kb on + strand at 486.112 kb on - strand at 486.254 kb on - strand at 486.364 kb on + strand at 486.364 kb on + strand at 486.382 kb on + strand at 486.382 kb on + strand at 486.382 kb on + strand at 486.383 kb on - strand at 486.389 kb on + strand at 486.389 kb on + strand at 486.389 kb on + strand at 486.390 kb on - strand at 486.390 kb on - strand at 486.390 kb on - strand at 486.440 kb on + strand at 486.441 kb on - strand at 486.441 kb on - strand at 486.441 kb on - strand at 486.441 kb on - strand at 486.441 kb on - strand at 486.497 kb on + strand, within ABZR86_RS19950 at 486.497 kb on + strand, within ABZR86_RS19950 at 486.498 kb on - strand, within ABZR86_RS19950 at 486.720 kb on + strand at 486.792 kb on + strand, within ABZR86_RS19955 at 486.793 kb on - strand, within ABZR86_RS19955 at 486.793 kb on - strand, within ABZR86_RS19955 at 486.793 kb on - strand, within ABZR86_RS19955 at 486.793 kb on - strand, within ABZR86_RS19955 at 486.836 kb on + strand, within ABZR86_RS19955 at 486.837 kb on - strand, within ABZR86_RS19955 at 486.868 kb on + strand, within ABZR86_RS19955 at 486.868 kb on + strand, within ABZR86_RS19955 at 486.868 kb on + strand, within ABZR86_RS19955 at 486.868 kb on + strand, within ABZR86_RS19955 at 486.869 kb on - strand, within ABZR86_RS19955 at 486.869 kb on - strand, within ABZR86_RS19955 at 486.869 kb on - strand, within ABZR86_RS19955 at 486.869 kb on - strand, within ABZR86_RS19955 at 486.869 kb on - strand, within ABZR86_RS19955
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 484,677 + ABZR86_RS19940 0.65 +0.7 484,677 + ABZR86_RS19940 0.65 +0.4 484,677 + ABZR86_RS19940 0.65 +1.2 484,678 - ABZR86_RS19940 0.65 -0.0 484,683 + ABZR86_RS19940 0.66 -0.6 484,684 - ABZR86_RS19940 0.66 +0.0 484,684 - ABZR86_RS19940 0.66 +0.1 484,684 - ABZR86_RS19940 0.66 +0.7 484,684 - ABZR86_RS19940 0.66 +0.5 484,684 - ABZR86_RS19940 0.66 +0.2 484,684 - ABZR86_RS19940 0.66 +0.2 484,699 - ABZR86_RS19940 0.67 -0.3 484,699 - ABZR86_RS19940 0.67 +0.1 484,699 - ABZR86_RS19940 0.67 +0.5 484,699 - ABZR86_RS19940 0.67 -0.0 484,699 - ABZR86_RS19940 0.67 -0.2 484,701 + ABZR86_RS19940 0.67 +0.2 484,701 + ABZR86_RS19940 0.67 -0.2 484,701 + ABZR86_RS19940 0.67 +0.5 484,701 + ABZR86_RS19940 0.67 -0.3 484,701 + ABZR86_RS19940 0.67 +0.1 484,702 - ABZR86_RS19940 0.67 -0.2 484,702 - ABZR86_RS19940 0.67 +0.1 484,702 - ABZR86_RS19940 0.67 +0.3 484,790 + ABZR86_RS19940 0.72 +1.1 484,790 + ABZR86_RS19940 0.72 -0.2 484,790 + ABZR86_RS19940 0.72 +0.0 484,940 - ABZR86_RS19940 0.81 -0.4 485,064 + ABZR86_RS19940 0.89 -0.7 485,065 - ABZR86_RS19940 0.89 -1.0 485,079 + ABZR86_RS19940 0.90 -0.5 485,080 - ABZR86_RS19940 0.90 +0.0 485,258 + +0.4 485,258 + +1.2 485,258 + +0.8 485,285 + +0.3 485,286 - -0.1 485,413 + +0.8 485,413 + +0.4 485,566 + -0.3 485,566 + +0.9 485,567 - -0.6 485,567 - -0.5 485,570 + +0.6 485,570 + -0.2 485,571 - -1.6 485,571 - -0.7 485,571 - -1.0 485,571 - -1.5 485,571 - +0.5 485,571 - -0.7 485,571 - -1.1 485,571 - -0.3 485,643 + -1.5 485,766 + ABZR86_RS19945 0.29 -0.6 485,767 - ABZR86_RS19945 0.29 +0.4 485,944 - ABZR86_RS19945 0.70 -0.7 486,111 + +0.4 486,112 - +0.1 486,254 - -0.6 486,364 + +1.0 486,364 + +0.1 486,382 + +0.2 486,382 + -0.0 486,382 + -1.4 486,383 - +0.1 486,389 + +0.1 486,389 + +1.6 486,389 + +0.9 486,390 - -0.7 486,390 - +0.8 486,390 - -0.2 486,440 + -0.7 486,441 - -0.0 486,441 - -0.2 486,441 - -0.0 486,441 - -0.6 486,441 - -0.8 486,497 + ABZR86_RS19950 0.32 -1.5 486,497 + ABZR86_RS19950 0.32 +0.4 486,498 - ABZR86_RS19950 0.33 -0.2 486,720 + +1.8 486,792 + ABZR86_RS19955 0.17 +0.7 486,793 - ABZR86_RS19955 0.17 -0.1 486,793 - ABZR86_RS19955 0.17 +0.0 486,793 - ABZR86_RS19955 0.17 +0.8 486,793 - ABZR86_RS19955 0.17 -0.2 486,836 + ABZR86_RS19955 0.27 -0.0 486,837 - ABZR86_RS19955 0.28 +0.3 486,868 + ABZR86_RS19955 0.35 +0.4 486,868 + ABZR86_RS19955 0.35 +1.8 486,868 + ABZR86_RS19955 0.35 +0.5 486,868 + ABZR86_RS19955 0.35 -0.7 486,869 - ABZR86_RS19955 0.35 -0.7 486,869 - ABZR86_RS19955 0.35 +0.2 486,869 - ABZR86_RS19955 0.35 +0.0 486,869 - ABZR86_RS19955 0.35 -0.5 486,869 - ABZR86_RS19955 0.35 -0.2
Or see this region's nucleotide sequence