Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19185

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19180 and ABZR86_RS19185 are separated by 281 nucleotidesABZR86_RS19185 and ABZR86_RS19190 are separated by 12 nucleotides ABZR86_RS19180: ABZR86_RS19180 - ROK family transcriptional regulator, at 287,409 to 288,608 _RS19180 ABZR86_RS19185: ABZR86_RS19185 - efflux RND transporter periplasmic adaptor subunit, at 288,890 to 290,050 _RS19185 ABZR86_RS19190: ABZR86_RS19190 - efflux RND transporter permease subunit, at 290,063 to 293,209 _RS19190 Position (kb) 288 289 290 291Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 288.067 kb on - strand, within ABZR86_RS19180at 288.067 kb on - strand, within ABZR86_RS19180at 288.102 kb on + strand, within ABZR86_RS19180at 288.102 kb on + strand, within ABZR86_RS19180at 288.103 kb on - strand, within ABZR86_RS19180at 288.103 kb on - strand, within ABZR86_RS19180at 288.120 kb on + strand, within ABZR86_RS19180at 288.120 kb on + strand, within ABZR86_RS19180at 288.120 kb on + strand, within ABZR86_RS19180at 288.120 kb on + strand, within ABZR86_RS19180at 288.121 kb on - strand, within ABZR86_RS19180at 288.190 kb on - strand, within ABZR86_RS19180at 288.219 kb on + strand, within ABZR86_RS19180at 288.219 kb on + strand, within ABZR86_RS19180at 288.219 kb on + strand, within ABZR86_RS19180at 288.219 kb on + strand, within ABZR86_RS19180at 288.220 kb on - strand, within ABZR86_RS19180at 288.220 kb on - strand, within ABZR86_RS19180at 288.585 kb on + strandat 288.872 kb on + strandat 288.873 kb on - strandat 288.873 kb on - strandat 288.884 kb on - strandat 289.151 kb on + strand, within ABZR86_RS19185at 289.151 kb on + strand, within ABZR86_RS19185at 289.173 kb on - strand, within ABZR86_RS19185at 289.173 kb on - strand, within ABZR86_RS19185at 289.229 kb on + strand, within ABZR86_RS19185at 289.229 kb on + strand, within ABZR86_RS19185at 289.230 kb on - strand, within ABZR86_RS19185at 289.230 kb on - strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.628 kb on + strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.629 kb on - strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.742 kb on + strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 289.743 kb on - strand, within ABZR86_RS19185at 290.207 kb on + strandat 290.207 kb on + strandat 290.207 kb on + strandat 290.207 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.291 kb on + strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.292 kb on - strandat 290.532 kb on - strand, within ABZR86_RS19190at 290.532 kb on - strand, within ABZR86_RS19190at 290.606 kb on + strand, within ABZR86_RS19190at 290.648 kb on + strand, within ABZR86_RS19190at 290.648 kb on + strand, within ABZR86_RS19190at 290.649 kb on - strand, within ABZR86_RS19190at 290.649 kb on - strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.903 kb on + strand, within ABZR86_RS19190at 290.904 kb on - strand, within ABZR86_RS19190at 290.904 kb on - strand, within ABZR86_RS19190

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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288,067 - ABZR86_RS19180 0.55 +0.1
288,067 - ABZR86_RS19180 0.55 -0.1
288,102 + ABZR86_RS19180 0.58 -0.0
288,102 + ABZR86_RS19180 0.58 +1.2
288,103 - ABZR86_RS19180 0.58 -0.1
288,103 - ABZR86_RS19180 0.58 -0.3
288,120 + ABZR86_RS19180 0.59 +0.1
288,120 + ABZR86_RS19180 0.59 +0.1
288,120 + ABZR86_RS19180 0.59 -0.6
288,120 + ABZR86_RS19180 0.59 +0.6
288,121 - ABZR86_RS19180 0.59 -0.0
288,190 - ABZR86_RS19180 0.65 -0.7
288,219 + ABZR86_RS19180 0.68 -0.1
288,219 + ABZR86_RS19180 0.68 +0.4
288,219 + ABZR86_RS19180 0.68 +0.0
288,219 + ABZR86_RS19180 0.68 -0.6
288,220 - ABZR86_RS19180 0.68 -0.7
288,220 - ABZR86_RS19180 0.68 -0.4
288,585 + +1.5
288,872 + -1.7
288,873 - -3.8
288,873 - -0.7
288,884 - -3.4
289,151 + ABZR86_RS19185 0.22 -1.0
289,151 + ABZR86_RS19185 0.22 -1.6
289,173 - ABZR86_RS19185 0.24 -3.7
289,173 - ABZR86_RS19185 0.24 -3.9
289,229 + ABZR86_RS19185 0.29 -1.7
289,229 + ABZR86_RS19185 0.29 -3.4
289,230 - ABZR86_RS19185 0.29 -2.8
289,230 - ABZR86_RS19185 0.29 -3.8
289,628 + ABZR86_RS19185 0.64 -3.6
289,628 + ABZR86_RS19185 0.64 -3.7
289,628 + ABZR86_RS19185 0.64 -3.6
289,628 + ABZR86_RS19185 0.64 -3.2
289,629 - ABZR86_RS19185 0.64 -1.1
289,629 - ABZR86_RS19185 0.64 -3.4
289,629 - ABZR86_RS19185 0.64 -1.7
289,629 - ABZR86_RS19185 0.64 -3.2
289,629 - ABZR86_RS19185 0.64 -2.5
289,742 + ABZR86_RS19185 0.73 -1.3
289,742 + ABZR86_RS19185 0.73 -3.9
289,742 + ABZR86_RS19185 0.73 -3.9
289,742 + ABZR86_RS19185 0.73 -1.7
289,742 + ABZR86_RS19185 0.73 -2.7
289,742 + ABZR86_RS19185 0.73 -3.3
289,742 + ABZR86_RS19185 0.73 -2.5
289,742 + ABZR86_RS19185 0.73 -4.0
289,742 + ABZR86_RS19185 0.73 -3.5
289,742 + ABZR86_RS19185 0.73 -4.8
289,742 + ABZR86_RS19185 0.73 -2.9
289,742 + ABZR86_RS19185 0.73 -3.7
289,742 + ABZR86_RS19185 0.73 -1.0
289,742 + ABZR86_RS19185 0.73 -0.1
289,743 - ABZR86_RS19185 0.73 -3.4
289,743 - ABZR86_RS19185 0.73 -1.5
289,743 - ABZR86_RS19185 0.73 -2.7
289,743 - ABZR86_RS19185 0.73 -3.0
289,743 - ABZR86_RS19185 0.73 -1.9
290,207 + -2.6
290,207 + -4.3
290,207 + -3.0
290,207 + -3.9
290,291 + -1.6
290,291 + -3.9
290,291 + -1.4
290,291 + -3.1
290,291 + -4.6
290,291 + -3.8
290,291 + -4.9
290,291 + -5.0
290,292 - -3.3
290,292 - -4.4
290,292 - -4.7
290,292 - -3.2
290,292 - -4.0
290,292 - -0.4
290,292 - -3.5
290,292 - -2.9
290,292 - -4.2
290,292 - -1.5
290,292 - -2.3
290,292 - -1.4
290,292 - -3.7
290,292 - -2.5
290,292 - -1.3
290,532 - ABZR86_RS19190 0.15 -2.0
290,532 - ABZR86_RS19190 0.15 -3.0
290,606 + ABZR86_RS19190 0.17 -3.6
290,648 + ABZR86_RS19190 0.19 -3.8
290,648 + ABZR86_RS19190 0.19 -1.9
290,649 - ABZR86_RS19190 0.19 -2.2
290,649 - ABZR86_RS19190 0.19 -1.0
290,903 + ABZR86_RS19190 0.27 -2.5
290,903 + ABZR86_RS19190 0.27 -3.5
290,903 + ABZR86_RS19190 0.27 -2.9
290,903 + ABZR86_RS19190 0.27 -1.9
290,903 + ABZR86_RS19190 0.27 -2.6
290,903 + ABZR86_RS19190 0.27 -2.7
290,904 - ABZR86_RS19190 0.27 +0.9
290,904 - ABZR86_RS19190 0.27 -2.8

Or see this region's nucleotide sequence