Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19135 and ABZR86_RS19140 are separated by 147 nucleotides ABZR86_RS19140 and ABZR86_RS19145 are separated by 58 nucleotides ABZR86_RS19145 and ABZR86_RS19150 are separated by 567 nucleotides
ABZR86_RS19135: ABZR86_RS19135 - hypothetical protein, at 271,612 to 271,872
_RS19135
ABZR86_RS19140: ABZR86_RS19140 - outer membrane beta-barrel protein, at 272,020 to 272,745
_RS19140
ABZR86_RS19145: ABZR86_RS19145 - glucan ABC transporter ATP-binding protein/ permease, at 272,804 to 274,552
_RS19145
ABZR86_RS19150: ABZR86_RS19150 - TonB-dependent receptor, at 275,120 to 278,413
_RS19150
Position (kb) 272
273
274
275 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.878 kb on + strand at 271.878 kb on + strand at 271.900 kb on + strand at 271.924 kb on - strand at 272.103 kb on - strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.129 kb on - strand, within ABZR86_RS19140 at 272.129 kb on - strand, within ABZR86_RS19140 at 272.161 kb on + strand, within ABZR86_RS19140 at 272.287 kb on + strand, within ABZR86_RS19140 at 272.425 kb on + strand, within ABZR86_RS19140 at 272.446 kb on + strand, within ABZR86_RS19140 at 272.446 kb on + strand, within ABZR86_RS19140 at 272.608 kb on + strand, within ABZR86_RS19140 at 272.608 kb on + strand, within ABZR86_RS19140 at 272.720 kb on + strand at 272.720 kb on + strand at 272.805 kb on + strand at 272.806 kb on - strand at 272.806 kb on - strand at 272.807 kb on + strand at 272.807 kb on + strand at 272.808 kb on - strand at 272.808 kb on - strand at 272.808 kb on - strand at 273.166 kb on - strand, within ABZR86_RS19145 at 273.188 kb on - strand, within ABZR86_RS19145 at 273.402 kb on + strand, within ABZR86_RS19145 at 273.662 kb on - strand, within ABZR86_RS19145 at 274.534 kb on - strand at 274.534 kb on - strand at 274.782 kb on + strand at 274.783 kb on - strand at 274.906 kb on + strand at 275.036 kb on + strand at 275.036 kb on + strand at 275.037 kb on - strand at 275.187 kb on - strand at 275.324 kb on + strand at 275.324 kb on + strand at 275.411 kb on + strand at 275.412 kb on - strand at 275.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 271,878 + -1.9 271,878 + -2.4 271,900 + +0.1 271,924 - -0.8 272,103 - ABZR86_RS19140 0.11 -0.3 272,128 + ABZR86_RS19140 0.15 -0.2 272,128 + ABZR86_RS19140 0.15 -0.3 272,128 + ABZR86_RS19140 0.15 -0.6 272,129 - ABZR86_RS19140 0.15 +0.1 272,129 - ABZR86_RS19140 0.15 +0.4 272,161 + ABZR86_RS19140 0.19 -0.5 272,287 + ABZR86_RS19140 0.37 -0.8 272,425 + ABZR86_RS19140 0.56 -0.5 272,446 + ABZR86_RS19140 0.59 -0.6 272,446 + ABZR86_RS19140 0.59 +0.4 272,608 + ABZR86_RS19140 0.81 -0.7 272,608 + ABZR86_RS19140 0.81 +1.9 272,720 + -0.2 272,720 + +0.2 272,805 + +0.5 272,806 - -0.2 272,806 - -0.3 272,807 + +0.9 272,807 + +0.4 272,808 - -0.2 272,808 - -0.4 272,808 - -0.6 273,166 - ABZR86_RS19145 0.21 +0.1 273,188 - ABZR86_RS19145 0.22 +1.5 273,402 + ABZR86_RS19145 0.34 +0.4 273,662 - ABZR86_RS19145 0.49 -0.1 274,534 - -0.0 274,534 - +1.1 274,782 + -1.1 274,783 - +0.0 274,906 + -0.3 275,036 + -0.9 275,036 + +0.1 275,037 - +0.4 275,187 - +0.0 275,324 + -0.5 275,324 + -0.4 275,411 + -0.1 275,412 - -0.2 275,447 - +1.1
Or see this region's nucleotide sequence