Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19030 and ABZR86_RS19035 overlap by 4 nucleotides ABZR86_RS19035 and ABZR86_RS19040 are separated by 111 nucleotides ABZR86_RS19040 and ABZR86_RS19045 are separated by 133 nucleotides
ABZR86_RS19030: ABZR86_RS19030 - cystathionine gamma-synthase, at 242,992 to 244,191
_RS19030
ABZR86_RS19035: ABZR86_RS19035 - homoserine dehydrogenase, at 244,188 to 245,276
_RS19035
ABZR86_RS19040: ABZR86_RS19040 - hypothetical protein, at 245,388 to 245,657
_RS19040
ABZR86_RS19045: ABZR86_RS19045 - APC family permease, at 245,791 to 247,455
_RS19045
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1 at 243.598 kb on + strand, within ABZR86_RS19030 at 243.598 kb on + strand, within ABZR86_RS19030 at 243.599 kb on - strand, within ABZR86_RS19030 at 243.612 kb on + strand, within ABZR86_RS19030 at 243.830 kb on - strand, within ABZR86_RS19030 at 243.830 kb on - strand, within ABZR86_RS19030 at 243.830 kb on - strand, within ABZR86_RS19030 at 243.833 kb on - strand, within ABZR86_RS19030 at 243.961 kb on + strand, within ABZR86_RS19030 at 243.961 kb on + strand, within ABZR86_RS19030 at 243.962 kb on - strand, within ABZR86_RS19030 at 244.199 kb on - strand at 244.773 kb on + strand, within ABZR86_RS19035 at 244.827 kb on + strand, within ABZR86_RS19035 at 244.828 kb on - strand, within ABZR86_RS19035 at 245.146 kb on - strand, within ABZR86_RS19035 at 245.146 kb on - strand, within ABZR86_RS19035 at 245.184 kb on + strand at 245.288 kb on - strand at 245.288 kb on - strand at 245.288 kb on - strand at 245.288 kb on - strand at 245.375 kb on + strand at 245.375 kb on + strand at 245.375 kb on + strand at 245.375 kb on + strand at 245.518 kb on + strand, within ABZR86_RS19040 at 245.533 kb on + strand, within ABZR86_RS19040 at 245.533 kb on + strand, within ABZR86_RS19040 at 245.533 kb on + strand, within ABZR86_RS19040 at 245.533 kb on + strand, within ABZR86_RS19040 at 245.533 kb on + strand, within ABZR86_RS19040 at 245.534 kb on - strand, within ABZR86_RS19040 at 245.534 kb on - strand, within ABZR86_RS19040 at 245.534 kb on - strand, within ABZR86_RS19040 at 245.534 kb on - strand, within ABZR86_RS19040 at 245.534 kb on - strand, within ABZR86_RS19040 at 245.534 kb on - strand, within ABZR86_RS19040 at 245.534 kb on - strand, within ABZR86_RS19040 at 245.535 kb on + strand, within ABZR86_RS19040 at 245.535 kb on + strand, within ABZR86_RS19040 at 245.536 kb on - strand, within ABZR86_RS19040 at 245.536 kb on - strand, within ABZR86_RS19040 at 245.611 kb on - strand, within ABZR86_RS19040 at 245.677 kb on + strand at 245.677 kb on + strand at 245.677 kb on + strand at 245.678 kb on - strand at 245.678 kb on - strand at 245.678 kb on - strand at 245.921 kb on + strand at 245.922 kb on - strand at 245.922 kb on - strand at 246.060 kb on + strand, within ABZR86_RS19045 at 246.102 kb on - strand, within ABZR86_RS19045 at 246.110 kb on + strand, within ABZR86_RS19045 at 246.124 kb on + strand, within ABZR86_RS19045 at 246.124 kb on + strand, within ABZR86_RS19045 at 246.124 kb on + strand, within ABZR86_RS19045 at 246.174 kb on - strand, within ABZR86_RS19045
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 243,598 + ABZR86_RS19030 0.51 -1.0 243,598 + ABZR86_RS19030 0.51 -0.8 243,599 - ABZR86_RS19030 0.51 +0.3 243,612 + ABZR86_RS19030 0.52 +0.4 243,830 - ABZR86_RS19030 0.70 +1.0 243,830 - ABZR86_RS19030 0.70 -0.8 243,830 - ABZR86_RS19030 0.70 +0.0 243,833 - ABZR86_RS19030 0.70 +0.0 243,961 + ABZR86_RS19030 0.81 -0.6 243,961 + ABZR86_RS19030 0.81 -0.9 243,962 - ABZR86_RS19030 0.81 -0.5 244,199 - -0.7 244,773 + ABZR86_RS19035 0.54 +0.4 244,827 + ABZR86_RS19035 0.59 -1.7 244,828 - ABZR86_RS19035 0.59 -0.1 245,146 - ABZR86_RS19035 0.88 -0.4 245,146 - ABZR86_RS19035 0.88 -0.5 245,184 + -1.0 245,288 - -1.0 245,288 - +0.3 245,288 - -0.8 245,288 - -0.2 245,375 + +1.1 245,375 + -0.1 245,375 + +0.0 245,375 + +0.1 245,518 + ABZR86_RS19040 0.48 +0.3 245,533 + ABZR86_RS19040 0.54 -0.4 245,533 + ABZR86_RS19040 0.54 -0.3 245,533 + ABZR86_RS19040 0.54 +1.0 245,533 + ABZR86_RS19040 0.54 +0.5 245,533 + ABZR86_RS19040 0.54 -0.8 245,534 - ABZR86_RS19040 0.54 -0.3 245,534 - ABZR86_RS19040 0.54 -0.1 245,534 - ABZR86_RS19040 0.54 +0.2 245,534 - ABZR86_RS19040 0.54 +0.1 245,534 - ABZR86_RS19040 0.54 +1.2 245,534 - ABZR86_RS19040 0.54 -1.8 245,534 - ABZR86_RS19040 0.54 +0.1 245,535 + ABZR86_RS19040 0.54 +0.3 245,535 + ABZR86_RS19040 0.54 +0.6 245,536 - ABZR86_RS19040 0.55 -0.2 245,536 - ABZR86_RS19040 0.55 +0.3 245,611 - ABZR86_RS19040 0.83 -0.6 245,677 + +0.2 245,677 + -0.1 245,677 + +0.3 245,678 - -0.7 245,678 - +0.3 245,678 - +0.3 245,921 + +0.7 245,922 - +0.4 245,922 - +0.1 246,060 + ABZR86_RS19045 0.16 +0.4 246,102 - ABZR86_RS19045 0.19 +1.0 246,110 + ABZR86_RS19045 0.19 +0.5 246,124 + ABZR86_RS19045 0.20 -0.3 246,124 + ABZR86_RS19045 0.20 +0.8 246,124 + ABZR86_RS19045 0.20 +0.2 246,174 - ABZR86_RS19045 0.23 +0.2
Or see this region's nucleotide sequence