Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18890

Experiment: Sisomicin 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS18885 and ABZR86_RS18890 are separated by 311 nucleotidesABZR86_RS18890 and ABZR86_RS18895 are separated by 209 nucleotides ABZR86_RS18885: ABZR86_RS18885 - met regulon transcriptional regulator MetJ, at 207,786 to 208,340 _RS18885 ABZR86_RS18890: ABZR86_RS18890 - energy transducer TonB, at 208,652 to 209,683 _RS18890 ABZR86_RS18895: ABZR86_RS18895 - serine hydrolase domain-containing protein, at 209,893 to 211,296 _RS18895 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 207.752 kb on + strandat 207.768 kb on + strandat 207.813 kb on + strandat 207.813 kb on + strandat 207.814 kb on - strandat 207.863 kb on + strand, within ABZR86_RS18885at 207.864 kb on - strand, within ABZR86_RS18885at 207.864 kb on - strand, within ABZR86_RS18885at 207.880 kb on + strand, within ABZR86_RS18885at 207.903 kb on - strand, within ABZR86_RS18885at 207.978 kb on - strand, within ABZR86_RS18885at 208.019 kb on + strand, within ABZR86_RS18885at 208.020 kb on - strand, within ABZR86_RS18885at 208.020 kb on - strand, within ABZR86_RS18885at 208.020 kb on - strand, within ABZR86_RS18885at 208.020 kb on - strand, within ABZR86_RS18885at 208.338 kb on + strandat 208.338 kb on + strandat 208.338 kb on + strandat 208.339 kb on - strandat 208.339 kb on - strandat 208.551 kb on + strandat 208.552 kb on - strandat 208.603 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.700 kb on - strandat 208.716 kb on + strandat 208.716 kb on + strandat 208.717 kb on - strandat 208.964 kb on + strand, within ABZR86_RS18890at 208.964 kb on + strand, within ABZR86_RS18890at 208.964 kb on + strand, within ABZR86_RS18890at 208.965 kb on - strand, within ABZR86_RS18890at 209.045 kb on - strand, within ABZR86_RS18890at 209.129 kb on + strand, within ABZR86_RS18890at 209.130 kb on - strand, within ABZR86_RS18890at 209.130 kb on - strand, within ABZR86_RS18890at 209.140 kb on + strand, within ABZR86_RS18890at 209.613 kb on - strandat 209.681 kb on + strandat 209.682 kb on - strandat 209.682 kb on - strandat 209.682 kb on - strandat 210.119 kb on + strand, within ABZR86_RS18895at 210.120 kb on - strand, within ABZR86_RS18895at 210.413 kb on + strand, within ABZR86_RS18895at 210.414 kb on - strand, within ABZR86_RS18895at 210.414 kb on - strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.512 kb on + strand, within ABZR86_RS18895at 210.567 kb on - strand, within ABZR86_RS18895at 210.590 kb on + strand, within ABZR86_RS18895at 210.590 kb on + strand, within ABZR86_RS18895at 210.590 kb on + strand, within ABZR86_RS18895at 210.590 kb on + strand, within ABZR86_RS18895at 210.591 kb on - strand, within ABZR86_RS18895at 210.635 kb on + strand, within ABZR86_RS18895at 210.636 kb on - strand, within ABZR86_RS18895

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
remove
207,752 + -0.3
207,768 + +0.5
207,813 + +0.7
207,813 + +1.6
207,814 - -1.7
207,863 + ABZR86_RS18885 0.14 +1.8
207,864 - ABZR86_RS18885 0.14 +1.8
207,864 - ABZR86_RS18885 0.14 -1.3
207,880 + ABZR86_RS18885 0.17 +1.5
207,903 - ABZR86_RS18885 0.21 -0.6
207,978 - ABZR86_RS18885 0.35 -1.0
208,019 + ABZR86_RS18885 0.42 -0.0
208,020 - ABZR86_RS18885 0.42 +1.0
208,020 - ABZR86_RS18885 0.42 -0.5
208,020 - ABZR86_RS18885 0.42 -1.2
208,020 - ABZR86_RS18885 0.42 -1.1
208,338 + -1.6
208,338 + -1.9
208,338 + -1.9
208,339 - -0.4
208,339 - -1.3
208,551 + -0.5
208,552 - -0.3
208,603 + -0.3
208,668 + +0.8
208,668 + -2.5
208,668 + -0.3
208,668 + +0.0
208,668 + -0.8
208,668 + +0.2
208,668 + +1.3
208,668 + -0.8
208,668 + +1.3
208,668 + +0.2
208,668 + -0.4
208,668 + +0.9
208,669 - +0.0
208,669 - -0.1
208,669 - +1.5
208,669 - -0.8
208,669 - -1.5
208,669 - -1.7
208,669 - +0.4
208,669 - -0.9
208,669 - -0.1
208,669 - -1.0
208,669 - -0.8
208,669 - -2.4
208,700 - +0.4
208,716 + -1.2
208,716 + -0.4
208,717 - -0.9
208,964 + ABZR86_RS18890 0.30 -0.3
208,964 + ABZR86_RS18890 0.30 -0.1
208,964 + ABZR86_RS18890 0.30 +1.0
208,965 - ABZR86_RS18890 0.30 -0.7
209,045 - ABZR86_RS18890 0.38 -1.5
209,129 + ABZR86_RS18890 0.46 -1.3
209,130 - ABZR86_RS18890 0.46 -0.2
209,130 - ABZR86_RS18890 0.46 +0.0
209,140 + ABZR86_RS18890 0.47 -0.5
209,613 - -1.2
209,681 + -1.3
209,682 - -0.1
209,682 - -0.8
209,682 - -1.6
210,119 + ABZR86_RS18895 0.16 -0.4
210,120 - ABZR86_RS18895 0.16 -1.3
210,413 + ABZR86_RS18895 0.37 +0.2
210,414 - ABZR86_RS18895 0.37 +0.2
210,414 - ABZR86_RS18895 0.37 -0.1
210,416 + ABZR86_RS18895 0.37 +0.0
210,416 + ABZR86_RS18895 0.37 +0.7
210,416 + ABZR86_RS18895 0.37 +0.0
210,416 + ABZR86_RS18895 0.37 +0.0
210,416 + ABZR86_RS18895 0.37 -1.2
210,417 - ABZR86_RS18895 0.37 +0.3
210,417 - ABZR86_RS18895 0.37 +1.1
210,417 - ABZR86_RS18895 0.37 +0.7
210,417 - ABZR86_RS18895 0.37 -0.9
210,417 - ABZR86_RS18895 0.37 -0.1
210,417 - ABZR86_RS18895 0.37 +0.1
210,512 + ABZR86_RS18895 0.44 +0.4
210,567 - ABZR86_RS18895 0.48 -0.2
210,590 + ABZR86_RS18895 0.50 -2.6
210,590 + ABZR86_RS18895 0.50 +0.4
210,590 + ABZR86_RS18895 0.50 -0.4
210,590 + ABZR86_RS18895 0.50 +0.3
210,591 - ABZR86_RS18895 0.50 -0.0
210,635 + ABZR86_RS18895 0.53 -1.7
210,636 - ABZR86_RS18895 0.53 -0.5

Or see this region's nucleotide sequence