Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18460

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18455 and ABZR86_RS18460 are separated by 206 nucleotidesABZR86_RS18460 and ABZR86_RS18465 are separated by 57 nucleotidesABZR86_RS18465 and ABZR86_RS18470 are separated by 147 nucleotides ABZR86_RS18455: ABZR86_RS18455 - tryptophan 2,3-dioxygenase family protein, at 110,516 to 111,364 _RS18455 ABZR86_RS18460: ABZR86_RS18460 - oligopeptide:H+ symporter, at 111,571 to 113,076 _RS18460 ABZR86_RS18465: ABZR86_RS18465 - MarR family winged helix-turn-helix transcriptional regulator, at 113,134 to 113,649 _RS18465 ABZR86_RS18470: ABZR86_RS18470 - 4-hydroxyphenylpyruvate dioxygenase, at 113,797 to 114,891 _RS18470 Position (kb) 111 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 110.579 kb on + strandat 110.588 kb on + strandat 110.804 kb on + strand, within ABZR86_RS18455at 110.804 kb on + strand, within ABZR86_RS18455at 110.805 kb on - strand, within ABZR86_RS18455at 110.805 kb on - strand, within ABZR86_RS18455at 110.847 kb on - strand, within ABZR86_RS18455at 110.847 kb on - strand, within ABZR86_RS18455at 111.015 kb on - strand, within ABZR86_RS18455at 111.032 kb on + strand, within ABZR86_RS18455at 111.032 kb on + strand, within ABZR86_RS18455at 111.033 kb on - strand, within ABZR86_RS18455at 111.033 kb on - strand, within ABZR86_RS18455at 111.033 kb on - strand, within ABZR86_RS18455at 111.137 kb on + strand, within ABZR86_RS18455at 111.137 kb on + strand, within ABZR86_RS18455at 111.137 kb on + strand, within ABZR86_RS18455at 111.137 kb on + strand, within ABZR86_RS18455at 111.138 kb on - strand, within ABZR86_RS18455at 111.167 kb on + strand, within ABZR86_RS18455at 111.167 kb on + strand, within ABZR86_RS18455at 111.168 kb on - strand, within ABZR86_RS18455at 111.168 kb on - strand, within ABZR86_RS18455at 111.168 kb on - strand, within ABZR86_RS18455at 111.168 kb on - strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.170 kb on + strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.171 kb on - strand, within ABZR86_RS18455at 111.229 kb on + strand, within ABZR86_RS18455at 111.229 kb on + strand, within ABZR86_RS18455at 111.229 kb on + strand, within ABZR86_RS18455at 111.229 kb on + strand, within ABZR86_RS18455at 111.230 kb on - strand, within ABZR86_RS18455at 111.230 kb on - strand, within ABZR86_RS18455at 111.230 kb on - strand, within ABZR86_RS18455at 111.491 kb on + strandat 111.491 kb on + strandat 111.491 kb on + strandat 111.492 kb on - strandat 111.492 kb on - strandat 111.492 kb on - strandat 111.522 kb on + strandat 111.523 kb on - strandat 111.542 kb on - strandat 111.685 kb on + strandat 111.686 kb on - strandat 111.686 kb on - strandat 111.686 kb on - strandat 111.686 kb on - strandat 111.712 kb on + strandat 111.712 kb on + strandat 111.713 kb on - strandat 111.713 kb on - strandat 111.713 kb on - strandat 111.713 kb on - strandat 111.772 kb on + strand, within ABZR86_RS18460at 111.773 kb on - strand, within ABZR86_RS18460at 111.796 kb on + strand, within ABZR86_RS18460at 111.796 kb on + strand, within ABZR86_RS18460at 111.797 kb on - strand, within ABZR86_RS18460at 111.820 kb on + strand, within ABZR86_RS18460at 112.045 kb on + strand, within ABZR86_RS18460at 112.045 kb on + strand, within ABZR86_RS18460at 112.045 kb on + strand, within ABZR86_RS18460at 112.045 kb on + strand, within ABZR86_RS18460at 112.045 kb on + strand, within ABZR86_RS18460at 112.046 kb on - strand, within ABZR86_RS18460at 112.046 kb on - strand, within ABZR86_RS18460at 112.046 kb on - strand, within ABZR86_RS18460at 112.046 kb on - strand, within ABZR86_RS18460at 112.046 kb on - strand, within ABZR86_RS18460at 112.046 kb on - strand, within ABZR86_RS18460at 112.046 kb on - strand, within ABZR86_RS18460at 112.046 kb on - strand, within ABZR86_RS18460at 112.105 kb on + strand, within ABZR86_RS18460at 112.105 kb on + strand, within ABZR86_RS18460at 112.106 kb on - strand, within ABZR86_RS18460at 112.135 kb on + strand, within ABZR86_RS18460at 112.136 kb on - strand, within ABZR86_RS18460at 112.136 kb on - strand, within ABZR86_RS18460at 112.136 kb on - strand, within ABZR86_RS18460at 112.264 kb on + strand, within ABZR86_RS18460at 112.264 kb on + strand, within ABZR86_RS18460at 112.264 kb on + strand, within ABZR86_RS18460at 112.264 kb on + strand, within ABZR86_RS18460at 112.265 kb on - strand, within ABZR86_RS18460at 112.303 kb on + strand, within ABZR86_RS18460at 112.304 kb on - strand, within ABZR86_RS18460at 112.477 kb on + strand, within ABZR86_RS18460at 112.477 kb on + strand, within ABZR86_RS18460at 112.477 kb on + strand, within ABZR86_RS18460at 112.478 kb on - strand, within ABZR86_RS18460at 112.478 kb on - strand, within ABZR86_RS18460at 112.478 kb on - strand, within ABZR86_RS18460at 112.478 kb on - strand, within ABZR86_RS18460at 112.478 kb on - strand, within ABZR86_RS18460at 112.478 kb on - strand, within ABZR86_RS18460at 112.478 kb on - strand, within ABZR86_RS18460at 112.720 kb on + strand, within ABZR86_RS18460at 112.720 kb on + strand, within ABZR86_RS18460at 112.720 kb on + strand, within ABZR86_RS18460at 112.720 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.721 kb on - strand, within ABZR86_RS18460at 112.783 kb on + strand, within ABZR86_RS18460at 112.783 kb on + strand, within ABZR86_RS18460at 112.783 kb on + strand, within ABZR86_RS18460at 112.783 kb on + strand, within ABZR86_RS18460at 112.783 kb on + strand, within ABZR86_RS18460at 112.784 kb on - strand, within ABZR86_RS18460at 112.784 kb on - strand, within ABZR86_RS18460at 112.784 kb on - strand, within ABZR86_RS18460at 112.784 kb on - strand, within ABZR86_RS18460at 112.784 kb on - strand, within ABZR86_RS18460at 112.784 kb on - strand, within ABZR86_RS18460at 112.784 kb on - strand, within ABZR86_RS18460at 113.101 kb on + strandat 113.135 kb on + strandat 113.136 kb on - strandat 113.528 kb on + strand, within ABZR86_RS18465at 113.528 kb on + strand, within ABZR86_RS18465at 113.528 kb on + strand, within ABZR86_RS18465at 113.529 kb on - strand, within ABZR86_RS18465at 113.580 kb on - strand, within ABZR86_RS18465at 113.680 kb on - strandat 113.680 kb on - strandat 113.683 kb on + strandat 113.683 kb on + strandat 113.684 kb on - strandat 113.684 kb on - strandat 113.687 kb on + strandat 113.687 kb on + strandat 113.688 kb on - strandat 113.688 kb on - strandat 113.688 kb on - strandat 113.690 kb on - strandat 113.690 kb on - strandat 113.977 kb on + strand, within ABZR86_RS18470at 113.978 kb on - strand, within ABZR86_RS18470at 113.978 kb on - strand, within ABZR86_RS18470

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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110,579 + +0.0
110,588 + +0.7
110,804 + ABZR86_RS18455 0.34 +0.4
110,804 + ABZR86_RS18455 0.34 +0.6
110,805 - ABZR86_RS18455 0.34 -0.4
110,805 - ABZR86_RS18455 0.34 +1.2
110,847 - ABZR86_RS18455 0.39 +0.3
110,847 - ABZR86_RS18455 0.39 +0.4
111,015 - ABZR86_RS18455 0.59 +0.9
111,032 + ABZR86_RS18455 0.61 -0.0
111,032 + ABZR86_RS18455 0.61 +0.5
111,033 - ABZR86_RS18455 0.61 -0.0
111,033 - ABZR86_RS18455 0.61 +0.1
111,033 - ABZR86_RS18455 0.61 +0.0
111,137 + ABZR86_RS18455 0.73 -1.1
111,137 + ABZR86_RS18455 0.73 +0.9
111,137 + ABZR86_RS18455 0.73 -0.3
111,137 + ABZR86_RS18455 0.73 +0.1
111,138 - ABZR86_RS18455 0.73 -0.9
111,167 + ABZR86_RS18455 0.77 +0.4
111,167 + ABZR86_RS18455 0.77 -3.4
111,168 - ABZR86_RS18455 0.77 +2.2
111,168 - ABZR86_RS18455 0.77 -0.1
111,168 - ABZR86_RS18455 0.77 -0.3
111,168 - ABZR86_RS18455 0.77 -0.1
111,170 + ABZR86_RS18455 0.77 -0.3
111,170 + ABZR86_RS18455 0.77 -0.1
111,170 + ABZR86_RS18455 0.77 -0.8
111,170 + ABZR86_RS18455 0.77 -0.0
111,170 + ABZR86_RS18455 0.77 -0.4
111,170 + ABZR86_RS18455 0.77 -0.1
111,170 + ABZR86_RS18455 0.77 +0.0
111,170 + ABZR86_RS18455 0.77 -0.7
111,171 - ABZR86_RS18455 0.77 +0.4
111,171 - ABZR86_RS18455 0.77 +0.7
111,171 - ABZR86_RS18455 0.77 +0.3
111,171 - ABZR86_RS18455 0.77 +0.2
111,171 - ABZR86_RS18455 0.77 +0.3
111,171 - ABZR86_RS18455 0.77 +0.4
111,171 - ABZR86_RS18455 0.77 +0.5
111,171 - ABZR86_RS18455 0.77 -0.2
111,171 - ABZR86_RS18455 0.77 +0.2
111,171 - ABZR86_RS18455 0.77 +0.5
111,171 - ABZR86_RS18455 0.77 -0.3
111,229 + ABZR86_RS18455 0.84 +0.0
111,229 + ABZR86_RS18455 0.84 -0.4
111,229 + ABZR86_RS18455 0.84 -0.2
111,229 + ABZR86_RS18455 0.84 -2.3
111,230 - ABZR86_RS18455 0.84 -0.2
111,230 - ABZR86_RS18455 0.84 +1.0
111,230 - ABZR86_RS18455 0.84 -0.7
111,491 + -0.2
111,491 + -2.5
111,491 + -0.4
111,492 - +1.7
111,492 - +2.4
111,492 - +2.3
111,522 + +0.4
111,523 - +1.9
111,542 - +1.6
111,685 + +1.9
111,686 - +1.3
111,686 - +1.8
111,686 - +1.7
111,686 - +2.4
111,712 + +2.3
111,712 + +0.7
111,713 - +3.1
111,713 - +2.9
111,713 - +2.4
111,713 - +2.7
111,772 + ABZR86_RS18460 0.13 +2.5
111,773 - ABZR86_RS18460 0.13 +2.4
111,796 + ABZR86_RS18460 0.15 +2.3
111,796 + ABZR86_RS18460 0.15 +2.3
111,797 - ABZR86_RS18460 0.15 +2.1
111,820 + ABZR86_RS18460 0.17 +2.8
112,045 + ABZR86_RS18460 0.31 +2.2
112,045 + ABZR86_RS18460 0.31 +2.3
112,045 + ABZR86_RS18460 0.31 +1.5
112,045 + ABZR86_RS18460 0.31 +2.2
112,045 + ABZR86_RS18460 0.31 +2.7
112,046 - ABZR86_RS18460 0.32 +2.2
112,046 - ABZR86_RS18460 0.32 +2.1
112,046 - ABZR86_RS18460 0.32 +2.0
112,046 - ABZR86_RS18460 0.32 +1.9
112,046 - ABZR86_RS18460 0.32 +2.1
112,046 - ABZR86_RS18460 0.32 +2.8
112,046 - ABZR86_RS18460 0.32 +2.8
112,046 - ABZR86_RS18460 0.32 +3.8
112,105 + ABZR86_RS18460 0.35 +2.3
112,105 + ABZR86_RS18460 0.35 +2.0
112,106 - ABZR86_RS18460 0.36 +1.7
112,135 + ABZR86_RS18460 0.37 +2.7
112,136 - ABZR86_RS18460 0.38 +3.2
112,136 - ABZR86_RS18460 0.38 +2.3
112,136 - ABZR86_RS18460 0.38 +2.7
112,264 + ABZR86_RS18460 0.46 +2.3
112,264 + ABZR86_RS18460 0.46 +2.6
112,264 + ABZR86_RS18460 0.46 +2.1
112,264 + ABZR86_RS18460 0.46 +2.6
112,265 - ABZR86_RS18460 0.46 +2.6
112,303 + ABZR86_RS18460 0.49 +3.0
112,304 - ABZR86_RS18460 0.49 +2.8
112,477 + ABZR86_RS18460 0.60 +2.7
112,477 + ABZR86_RS18460 0.60 +2.3
112,477 + ABZR86_RS18460 0.60 +2.4
112,478 - ABZR86_RS18460 0.60 +2.7
112,478 - ABZR86_RS18460 0.60 +2.6
112,478 - ABZR86_RS18460 0.60 +1.4
112,478 - ABZR86_RS18460 0.60 +3.7
112,478 - ABZR86_RS18460 0.60 +2.9
112,478 - ABZR86_RS18460 0.60 +2.8
112,478 - ABZR86_RS18460 0.60 +2.2
112,720 + ABZR86_RS18460 0.76 +1.7
112,720 + ABZR86_RS18460 0.76 +1.8
112,720 + ABZR86_RS18460 0.76 +2.2
112,720 - ABZR86_RS18460 0.76 +2.8
112,721 - ABZR86_RS18460 0.76 +3.0
112,721 - ABZR86_RS18460 0.76 +1.8
112,721 - ABZR86_RS18460 0.76 +2.1
112,721 - ABZR86_RS18460 0.76 +2.4
112,721 - ABZR86_RS18460 0.76 +2.8
112,721 - ABZR86_RS18460 0.76 +2.6
112,721 - ABZR86_RS18460 0.76 +2.4
112,721 - ABZR86_RS18460 0.76 +2.4
112,721 - ABZR86_RS18460 0.76 +2.4
112,783 + ABZR86_RS18460 0.80 +2.5
112,783 + ABZR86_RS18460 0.80 +2.4
112,783 + ABZR86_RS18460 0.80 +1.9
112,783 + ABZR86_RS18460 0.80 +3.1
112,783 + ABZR86_RS18460 0.80 +2.5
112,784 - ABZR86_RS18460 0.81 +2.8
112,784 - ABZR86_RS18460 0.81 +3.0
112,784 - ABZR86_RS18460 0.81 +2.5
112,784 - ABZR86_RS18460 0.81 +2.4
112,784 - ABZR86_RS18460 0.81 +2.9
112,784 - ABZR86_RS18460 0.81 +2.8
112,784 - ABZR86_RS18460 0.81 +1.9
113,101 + +0.5
113,135 + -0.6
113,136 - +0.4
113,528 + ABZR86_RS18465 0.76 +0.3
113,528 + ABZR86_RS18465 0.76 +0.2
113,528 + ABZR86_RS18465 0.76 +0.1
113,529 - ABZR86_RS18465 0.77 +0.3
113,580 - ABZR86_RS18465 0.86 +0.2
113,680 - +0.7
113,680 - +1.1
113,683 + -0.5
113,683 + +0.2
113,684 - +1.6
113,684 - +1.3
113,687 + +0.5
113,687 + +0.5
113,688 - +1.3
113,688 - +1.9
113,688 - +1.3
113,690 - +1.6
113,690 - +0.6
113,977 + ABZR86_RS18470 0.16 +0.4
113,978 - ABZR86_RS18470 0.17 +1.4
113,978 - ABZR86_RS18470 0.17 +2.3

Or see this region's nucleotide sequence