Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18340 and ABZR86_RS18345 are separated by 120 nucleotides ABZR86_RS18345 and ABZR86_RS18350 are separated by 111 nucleotides ABZR86_RS18350 and ABZR86_RS18355 are separated by 87 nucleotides ABZR86_RS18355 and ABZR86_RS18360 overlap by 1 nucleotides
ABZR86_RS18340: ABZR86_RS18340 - SDR family oxidoreductase, at 90,085 to 90,834
_RS18340
ABZR86_RS18345: ABZR86_RS18345 - TetR/AcrR family transcriptional regulator, at 90,955 to 91,599
_RS18345
ABZR86_RS18350: ABZR86_RS18350 - tRNA dihydrouridine(20/20a) synthase DusA, at 91,711 to 92,694
_RS18350
ABZR86_RS18355: ABZR86_RS18355 - PepSY domain-containing protein, at 92,782 to 93,096
_RS18355
ABZR86_RS18360: ABZR86_RS18360 - response regulator transcription factor, at 93,096 to 93,788
_RS18360
Position (kb) 91
92
93 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 90.828 kb on + strand at 90.828 kb on + strand at 90.829 kb on - strand at 90.852 kb on + strand at 90.852 kb on + strand at 90.852 kb on + strand at 90.852 kb on + strand at 90.852 kb on + strand at 90.853 kb on - strand at 90.853 kb on - strand at 90.853 kb on - strand at 90.853 kb on - strand at 90.907 kb on - strand at 90.912 kb on + strand at 90.912 kb on + strand at 90.912 kb on + strand at 90.912 kb on + strand at 90.912 kb on + strand at 90.913 kb on - strand at 90.913 kb on - strand at 90.913 kb on - strand at 90.913 kb on - strand at 90.913 kb on - strand at 90.913 kb on - strand at 90.937 kb on + strand at 90.937 kb on + strand at 90.937 kb on + strand at 90.937 kb on + strand at 90.938 kb on - strand at 90.938 kb on - strand at 90.938 kb on - strand at 90.938 kb on - strand at 90.938 kb on - strand at 90.940 kb on + strand at 90.940 kb on + strand at 90.941 kb on - strand at 91.126 kb on + strand, within ABZR86_RS18345 at 91.127 kb on - strand, within ABZR86_RS18345 at 91.127 kb on - strand, within ABZR86_RS18345 at 91.127 kb on - strand, within ABZR86_RS18345 at 91.133 kb on - strand, within ABZR86_RS18345 at 91.133 kb on - strand, within ABZR86_RS18345 at 91.143 kb on + strand, within ABZR86_RS18345 at 91.259 kb on + strand, within ABZR86_RS18345 at 91.260 kb on - strand, within ABZR86_RS18345 at 91.260 kb on - strand, within ABZR86_RS18345 at 91.270 kb on + strand, within ABZR86_RS18345 at 91.271 kb on - strand, within ABZR86_RS18345 at 91.465 kb on + strand, within ABZR86_RS18345 at 91.466 kb on - strand, within ABZR86_RS18345 at 91.513 kb on - strand, within ABZR86_RS18345 at 91.555 kb on + strand at 91.556 kb on - strand at 91.556 kb on - strand at 91.698 kb on + strand at 91.699 kb on - strand at 91.699 kb on - strand at 91.699 kb on - strand at 91.703 kb on + strand at 91.704 kb on - strand at 91.704 kb on - strand at 91.822 kb on + strand, within ABZR86_RS18350 at 91.884 kb on + strand, within ABZR86_RS18350 at 91.885 kb on - strand, within ABZR86_RS18350 at 91.885 kb on - strand, within ABZR86_RS18350 at 91.885 kb on - strand, within ABZR86_RS18350 at 91.953 kb on + strand, within ABZR86_RS18350 at 91.953 kb on + strand, within ABZR86_RS18350 at 91.954 kb on - strand, within ABZR86_RS18350 at 91.954 kb on - strand, within ABZR86_RS18350 at 91.954 kb on - strand, within ABZR86_RS18350 at 92.078 kb on + strand, within ABZR86_RS18350 at 92.078 kb on + strand, within ABZR86_RS18350 at 92.078 kb on + strand, within ABZR86_RS18350 at 92.079 kb on - strand, within ABZR86_RS18350 at 92.079 kb on - strand, within ABZR86_RS18350 at 92.079 kb on - strand, within ABZR86_RS18350 at 92.152 kb on + strand, within ABZR86_RS18350 at 92.153 kb on - strand, within ABZR86_RS18350 at 92.153 kb on - strand, within ABZR86_RS18350 at 92.153 kb on - strand, within ABZR86_RS18350 at 92.281 kb on + strand, within ABZR86_RS18350 at 92.282 kb on - strand, within ABZR86_RS18350 at 92.282 kb on - strand, within ABZR86_RS18350 at 92.293 kb on + strand, within ABZR86_RS18350 at 92.293 kb on + strand, within ABZR86_RS18350 at 92.413 kb on + strand, within ABZR86_RS18350 at 92.413 kb on + strand, within ABZR86_RS18350 at 92.425 kb on + strand, within ABZR86_RS18350 at 92.426 kb on - strand, within ABZR86_RS18350 at 92.426 kb on - strand, within ABZR86_RS18350 at 92.426 kb on - strand, within ABZR86_RS18350 at 92.426 kb on - strand, within ABZR86_RS18350 at 92.455 kb on + strand, within ABZR86_RS18350 at 92.507 kb on - strand, within ABZR86_RS18350 at 92.507 kb on - strand, within ABZR86_RS18350 at 92.507 kb on - strand, within ABZR86_RS18350 at 92.573 kb on - strand, within ABZR86_RS18350 at 92.573 kb on - strand, within ABZR86_RS18350 at 92.684 kb on + strand at 92.685 kb on - strand at 92.717 kb on + strand at 92.717 kb on + strand at 92.717 kb on + strand at 92.717 kb on + strand at 92.717 kb on + strand at 92.718 kb on - strand at 92.736 kb on - strand at 92.781 kb on + strand at 92.781 kb on + strand at 92.929 kb on - strand, within ABZR86_RS18355 at 93.081 kb on + strand at 93.112 kb on + strand at 93.208 kb on - strand, within ABZR86_RS18360 at 93.387 kb on + strand, within ABZR86_RS18360 at 93.387 kb on + strand, within ABZR86_RS18360 at 93.387 kb on + strand, within ABZR86_RS18360 at 93.552 kb on + strand, within ABZR86_RS18360 at 93.552 kb on + strand, within ABZR86_RS18360 at 93.552 kb on + strand, within ABZR86_RS18360 at 93.552 kb on + strand, within ABZR86_RS18360 at 93.553 kb on - strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.558 kb on + strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.559 kb on - strand, within ABZR86_RS18360 at 93.573 kb on + strand, within ABZR86_RS18360 at 93.574 kb on - strand, within ABZR86_RS18360 at 93.574 kb on - strand, within ABZR86_RS18360 at 93.574 kb on - strand, within ABZR86_RS18360 at 93.574 kb on - strand, within ABZR86_RS18360 at 93.630 kb on + strand, within ABZR86_RS18360 at 93.630 kb on + strand, within ABZR86_RS18360 at 93.630 kb on + strand, within ABZR86_RS18360 at 93.630 kb on + strand, within ABZR86_RS18360 at 93.631 kb on - strand, within ABZR86_RS18360 at 93.631 kb on - strand, within ABZR86_RS18360 at 93.631 kb on - strand, within ABZR86_RS18360 at 93.631 kb on - strand, within ABZR86_RS18360
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 90,828 + +0.2 90,828 + +0.1 90,829 - +0.9 90,852 + -0.3 90,852 + +1.0 90,852 + +0.5 90,852 + +0.2 90,852 + -0.4 90,853 - +0.1 90,853 - +0.2 90,853 - +0.4 90,853 - -2.2 90,907 - -0.1 90,912 + +0.0 90,912 + +0.0 90,912 + +0.6 90,912 + +0.9 90,912 + -0.1 90,913 - -0.6 90,913 - -0.9 90,913 - +0.6 90,913 - +0.3 90,913 - +0.3 90,913 - +0.3 90,937 + +0.3 90,937 + +0.2 90,937 + -1.4 90,937 + +0.3 90,938 - +0.2 90,938 - +0.0 90,938 - +0.8 90,938 - -0.8 90,938 - -0.5 90,940 + -0.5 90,940 + -0.7 90,941 - +0.3 91,126 + ABZR86_RS18345 0.27 +0.1 91,127 - ABZR86_RS18345 0.27 -0.3 91,127 - ABZR86_RS18345 0.27 +0.1 91,127 - ABZR86_RS18345 0.27 -0.0 91,133 - ABZR86_RS18345 0.28 +0.4 91,133 - ABZR86_RS18345 0.28 +0.1 91,143 + ABZR86_RS18345 0.29 +0.4 91,259 + ABZR86_RS18345 0.47 +0.3 91,260 - ABZR86_RS18345 0.47 +0.1 91,260 - ABZR86_RS18345 0.47 +0.4 91,270 + ABZR86_RS18345 0.49 +0.2 91,271 - ABZR86_RS18345 0.49 +0.8 91,465 + ABZR86_RS18345 0.79 -1.2 91,466 - ABZR86_RS18345 0.79 -0.2 91,513 - ABZR86_RS18345 0.87 +0.9 91,555 + +1.0 91,556 - +0.5 91,556 - -1.2 91,698 + +0.6 91,699 - -0.2 91,699 - +0.5 91,699 - -1.0 91,703 + +0.4 91,704 - -0.0 91,704 - +0.4 91,822 + ABZR86_RS18350 0.11 +1.0 91,884 + ABZR86_RS18350 0.18 +1.7 91,885 - ABZR86_RS18350 0.18 +1.2 91,885 - ABZR86_RS18350 0.18 -1.1 91,885 - ABZR86_RS18350 0.18 +1.7 91,953 + ABZR86_RS18350 0.25 +1.4 91,953 + ABZR86_RS18350 0.25 +1.3 91,954 - ABZR86_RS18350 0.25 -0.2 91,954 - ABZR86_RS18350 0.25 +1.0 91,954 - ABZR86_RS18350 0.25 +0.8 92,078 + ABZR86_RS18350 0.37 +1.2 92,078 + ABZR86_RS18350 0.37 +1.3 92,078 + ABZR86_RS18350 0.37 -0.4 92,079 - ABZR86_RS18350 0.37 +0.7 92,079 - ABZR86_RS18350 0.37 +1.1 92,079 - ABZR86_RS18350 0.37 +1.3 92,152 + ABZR86_RS18350 0.45 +1.7 92,153 - ABZR86_RS18350 0.45 +1.0 92,153 - ABZR86_RS18350 0.45 +1.2 92,153 - ABZR86_RS18350 0.45 -0.2 92,281 + ABZR86_RS18350 0.58 +1.4 92,282 - ABZR86_RS18350 0.58 +0.7 92,282 - ABZR86_RS18350 0.58 -0.4 92,293 + ABZR86_RS18350 0.59 +1.8 92,293 + ABZR86_RS18350 0.59 +1.4 92,413 + ABZR86_RS18350 0.71 +0.8 92,413 + ABZR86_RS18350 0.71 +2.2 92,425 + ABZR86_RS18350 0.73 +1.4 92,426 - ABZR86_RS18350 0.73 +0.7 92,426 - ABZR86_RS18350 0.73 +1.1 92,426 - ABZR86_RS18350 0.73 +1.9 92,426 - ABZR86_RS18350 0.73 +1.5 92,455 + ABZR86_RS18350 0.76 +1.7 92,507 - ABZR86_RS18350 0.81 +1.3 92,507 - ABZR86_RS18350 0.81 +0.6 92,507 - ABZR86_RS18350 0.81 +1.2 92,573 - ABZR86_RS18350 0.88 +0.5 92,573 - ABZR86_RS18350 0.88 +1.8 92,684 + +0.0 92,685 - -0.1 92,717 + +0.8 92,717 + +1.0 92,717 + +0.2 92,717 + +0.4 92,717 + +0.4 92,718 - +0.0 92,736 - +0.7 92,781 + +0.5 92,781 + +0.4 92,929 - ABZR86_RS18355 0.47 -0.5 93,081 + -0.6 93,112 + -0.7 93,208 - ABZR86_RS18360 0.16 -3.2 93,387 + ABZR86_RS18360 0.42 -4.1 93,387 + ABZR86_RS18360 0.42 -1.7 93,387 + ABZR86_RS18360 0.42 -2.5 93,552 + ABZR86_RS18360 0.66 -3.6 93,552 + ABZR86_RS18360 0.66 -0.6 93,552 + ABZR86_RS18360 0.66 -4.1 93,552 + ABZR86_RS18360 0.66 -3.3 93,553 - ABZR86_RS18360 0.66 -1.2 93,558 + ABZR86_RS18360 0.67 -1.0 93,558 + ABZR86_RS18360 0.67 -1.9 93,558 + ABZR86_RS18360 0.67 -1.6 93,558 + ABZR86_RS18360 0.67 -3.4 93,558 + ABZR86_RS18360 0.67 -4.5 93,558 + ABZR86_RS18360 0.67 +0.1 93,558 + ABZR86_RS18360 0.67 -4.3 93,558 + ABZR86_RS18360 0.67 -3.4 93,558 + ABZR86_RS18360 0.67 -2.1 93,558 + ABZR86_RS18360 0.67 -0.8 93,558 + ABZR86_RS18360 0.67 -4.0 93,559 - ABZR86_RS18360 0.67 -1.9 93,559 - ABZR86_RS18360 0.67 -1.7 93,559 - ABZR86_RS18360 0.67 -3.1 93,559 - ABZR86_RS18360 0.67 -4.1 93,559 - ABZR86_RS18360 0.67 -2.9 93,559 - ABZR86_RS18360 0.67 -2.9 93,559 - ABZR86_RS18360 0.67 -1.4 93,559 - ABZR86_RS18360 0.67 -1.4 93,559 - ABZR86_RS18360 0.67 -3.5 93,559 - ABZR86_RS18360 0.67 -0.3 93,559 - ABZR86_RS18360 0.67 -1.7 93,573 + ABZR86_RS18360 0.69 -3.3 93,574 - ABZR86_RS18360 0.69 -1.7 93,574 - ABZR86_RS18360 0.69 -2.7 93,574 - ABZR86_RS18360 0.69 -3.0 93,574 - ABZR86_RS18360 0.69 -3.2 93,630 + ABZR86_RS18360 0.77 -4.2 93,630 + ABZR86_RS18360 0.77 -1.9 93,630 + ABZR86_RS18360 0.77 -4.3 93,630 + ABZR86_RS18360 0.77 -3.0 93,631 - ABZR86_RS18360 0.77 -1.5 93,631 - ABZR86_RS18360 0.77 -3.1 93,631 - ABZR86_RS18360 0.77 -3.1 93,631 - ABZR86_RS18360 0.77 -3.1
Or see this region's nucleotide sequence