Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS17705 and ABZR86_RS17710 are separated by 1 nucleotides ABZR86_RS17710 and ABZR86_RS17715 are separated by 134 nucleotides ABZR86_RS17715 and ABZR86_RS17720 are separated by 14 nucleotides
ABZR86_RS17705: ABZR86_RS17705 - ATP-binding protein, at 3,994,151 to 3,995,203
_RS17705
ABZR86_RS17710: ABZR86_RS17710 - response regulator transcription factor, at 3,995,205 to 3,995,900
_RS17710
ABZR86_RS17715: ABZR86_RS17715 - efflux transporter outer membrane subunit, at 3,996,035 to 3,997,492
_RS17715
ABZR86_RS17720: ABZR86_RS17720 - efflux RND transporter periplasmic adaptor subunit, at 3,997,507 to 3,998,610
_RS17720
Position (kb)
3996
3997
3998 Strain fitness (log2 ratio)
-1
0
1 at 3995.099 kb on - strand at 3995.099 kb on - strand at 3995.113 kb on - strand at 3995.113 kb on - strand at 3995.135 kb on + strand at 3995.224 kb on + strand at 3995.225 kb on - strand at 3995.478 kb on + strand, within ABZR86_RS17710 at 3995.478 kb on + strand, within ABZR86_RS17710 at 3995.478 kb on + strand, within ABZR86_RS17710 at 3995.479 kb on - strand, within ABZR86_RS17710 at 3995.479 kb on - strand, within ABZR86_RS17710 at 3995.479 kb on - strand, within ABZR86_RS17710 at 3995.608 kb on + strand, within ABZR86_RS17710 at 3995.608 kb on + strand, within ABZR86_RS17710 at 3995.608 kb on + strand, within ABZR86_RS17710 at 3995.608 kb on + strand, within ABZR86_RS17710 at 3995.609 kb on - strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.817 kb on + strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.818 kb on - strand, within ABZR86_RS17710 at 3995.842 kb on + strand at 3995.843 kb on - strand at 3995.910 kb on - strand at 3995.963 kb on + strand at 3995.999 kb on + strand at 3996.000 kb on - strand at 3996.560 kb on + strand, within ABZR86_RS17715 at 3996.560 kb on + strand, within ABZR86_RS17715 at 3996.560 kb on + strand, within ABZR86_RS17715 at 3996.561 kb on - strand, within ABZR86_RS17715 at 3996.561 kb on - strand, within ABZR86_RS17715 at 3996.561 kb on - strand, within ABZR86_RS17715 at 3996.599 kb on + strand, within ABZR86_RS17715 at 3996.599 kb on + strand, within ABZR86_RS17715 at 3996.599 kb on + strand, within ABZR86_RS17715 at 3996.965 kb on + strand, within ABZR86_RS17715 at 3996.965 kb on + strand, within ABZR86_RS17715 at 3997.241 kb on + strand, within ABZR86_RS17715 at 3998.284 kb on + strand, within ABZR86_RS17720 at 3998.284 kb on + strand, within ABZR86_RS17720 at 3998.284 kb on + strand, within ABZR86_RS17720 at 3998.285 kb on - strand, within ABZR86_RS17720 at 3998.285 kb on - strand, within ABZR86_RS17720 at 3998.410 kb on + strand, within ABZR86_RS17720 at 3998.410 kb on + strand, within ABZR86_RS17720 at 3998.410 kb on + strand, within ABZR86_RS17720 at 3998.411 kb on - strand, within ABZR86_RS17720 at 3998.411 kb on - strand, within ABZR86_RS17720 at 3998.411 kb on - strand, within ABZR86_RS17720 at 3998.411 kb on - strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.416 kb on + strand, within ABZR86_RS17720 at 3998.417 kb on - strand, within ABZR86_RS17720 at 3998.417 kb on - strand, within ABZR86_RS17720
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 3,995,099 - +0.4 3,995,099 - -0.2 3,995,113 - +0.9 3,995,113 - -1.0 3,995,135 + +0.1 3,995,224 + +0.1 3,995,225 - +0.0 3,995,478 + ABZR86_RS17710 0.39 +0.7 3,995,478 + ABZR86_RS17710 0.39 +0.1 3,995,478 + ABZR86_RS17710 0.39 -0.5 3,995,479 - ABZR86_RS17710 0.39 -0.2 3,995,479 - ABZR86_RS17710 0.39 -0.8 3,995,479 - ABZR86_RS17710 0.39 -0.6 3,995,608 + ABZR86_RS17710 0.58 +0.6 3,995,608 + ABZR86_RS17710 0.58 -0.5 3,995,608 + ABZR86_RS17710 0.58 -0.4 3,995,608 + ABZR86_RS17710 0.58 -0.9 3,995,609 - ABZR86_RS17710 0.58 -0.3 3,995,817 + ABZR86_RS17710 0.88 +0.3 3,995,817 + ABZR86_RS17710 0.88 +0.2 3,995,817 + ABZR86_RS17710 0.88 +0.1 3,995,817 + ABZR86_RS17710 0.88 +1.4 3,995,817 + ABZR86_RS17710 0.88 -1.0 3,995,817 + ABZR86_RS17710 0.88 +0.3 3,995,817 + ABZR86_RS17710 0.88 -0.3 3,995,818 - ABZR86_RS17710 0.88 +1.6 3,995,818 - ABZR86_RS17710 0.88 -0.0 3,995,818 - ABZR86_RS17710 0.88 +0.8 3,995,818 - ABZR86_RS17710 0.88 +0.2 3,995,818 - ABZR86_RS17710 0.88 -0.5 3,995,842 + +0.1 3,995,843 - +0.0 3,995,910 - -0.2 3,995,963 + +0.0 3,995,999 + -0.7 3,996,000 - -0.1 3,996,560 + ABZR86_RS17715 0.36 -0.2 3,996,560 + ABZR86_RS17715 0.36 +0.4 3,996,560 + ABZR86_RS17715 0.36 -0.2 3,996,561 - ABZR86_RS17715 0.36 -0.5 3,996,561 - ABZR86_RS17715 0.36 -0.1 3,996,561 - ABZR86_RS17715 0.36 +0.4 3,996,599 + ABZR86_RS17715 0.39 -0.3 3,996,599 + ABZR86_RS17715 0.39 -1.1 3,996,599 + ABZR86_RS17715 0.39 -0.2 3,996,965 + ABZR86_RS17715 0.64 -0.2 3,996,965 + ABZR86_RS17715 0.64 -0.1 3,997,241 + ABZR86_RS17715 0.83 -0.7 3,998,284 + ABZR86_RS17720 0.70 +0.4 3,998,284 + ABZR86_RS17720 0.70 -0.4 3,998,284 + ABZR86_RS17720 0.70 -0.5 3,998,285 - ABZR86_RS17720 0.70 +0.3 3,998,285 - ABZR86_RS17720 0.70 -0.4 3,998,410 + ABZR86_RS17720 0.82 -0.0 3,998,410 + ABZR86_RS17720 0.82 +0.6 3,998,410 + ABZR86_RS17720 0.82 -0.0 3,998,411 - ABZR86_RS17720 0.82 +0.1 3,998,411 - ABZR86_RS17720 0.82 +0.1 3,998,411 - ABZR86_RS17720 0.82 -0.8 3,998,411 - ABZR86_RS17720 0.82 +0.1 3,998,416 + ABZR86_RS17720 0.82 -0.6 3,998,416 + ABZR86_RS17720 0.82 -0.1 3,998,416 + ABZR86_RS17720 0.82 -0.3 3,998,416 + ABZR86_RS17720 0.82 -0.7 3,998,416 + ABZR86_RS17720 0.82 +1.0 3,998,416 + ABZR86_RS17720 0.82 -0.2 3,998,416 + ABZR86_RS17720 0.82 +0.1 3,998,416 + ABZR86_RS17720 0.82 -0.5 3,998,416 + ABZR86_RS17720 0.82 +0.2 3,998,416 + ABZR86_RS17720 0.82 -0.6 3,998,417 - ABZR86_RS17720 0.82 -0.0 3,998,417 - ABZR86_RS17720 0.82 -0.1
Or see this region's nucleotide sequence