Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16570

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16555 and ABZR86_RS16560 are separated by 7 nucleotidesABZR86_RS16560 and ABZR86_RS16565 are separated by 20 nucleotidesABZR86_RS16565 and ABZR86_RS16570 are separated by 164 nucleotidesABZR86_RS16570 and ABZR86_RS16575 are separated by 5 nucleotidesABZR86_RS16575 and ABZR86_RS16580 are separated by 58 nucleotides ABZR86_RS16555: ABZR86_RS16555 - DMT family transporter, at 3,739,807 to 3,740,736 _RS16555 ABZR86_RS16560: ABZR86_RS16560 - cupin domain-containing protein, at 3,740,744 to 3,741,040 _RS16560 ABZR86_RS16565: ABZR86_RS16565 - type II toxin-antitoxin system HicB family antitoxin, at 3,741,061 to 3,741,318 _RS16565 ABZR86_RS16570: ABZR86_RS16570 - glutathione S-transferase family protein, at 3,741,483 to 3,742,169 _RS16570 ABZR86_RS16575: ABZR86_RS16575 - hypothetical protein, at 3,742,175 to 3,742,717 _RS16575 ABZR86_RS16580: ABZR86_RS16580 - Pr6Pr family membrane protein, at 3,742,776 to 3,743,435 _RS16580 Position (kb) 3741 3742 3743Strain fitness (log2 ratio) -1 0 1 2at 3740.494 kb on + strand, within ABZR86_RS16555at 3740.494 kb on + strand, within ABZR86_RS16555at 3740.494 kb on + strand, within ABZR86_RS16555at 3740.495 kb on - strand, within ABZR86_RS16555at 3740.554 kb on + strand, within ABZR86_RS16555at 3740.555 kb on - strand, within ABZR86_RS16555at 3740.555 kb on - strand, within ABZR86_RS16555at 3740.555 kb on - strand, within ABZR86_RS16555at 3740.861 kb on + strand, within ABZR86_RS16560at 3740.966 kb on + strand, within ABZR86_RS16560at 3740.966 kb on + strand, within ABZR86_RS16560at 3740.966 kb on + strand, within ABZR86_RS16560at 3740.966 kb on + strand, within ABZR86_RS16560at 3740.967 kb on - strand, within ABZR86_RS16560at 3740.967 kb on - strand, within ABZR86_RS16560at 3741.016 kb on + strandat 3741.016 kb on + strandat 3741.062 kb on + strandat 3741.062 kb on + strandat 3741.171 kb on + strand, within ABZR86_RS16565at 3741.171 kb on + strand, within ABZR86_RS16565at 3741.171 kb on + strand, within ABZR86_RS16565at 3741.171 kb on + strand, within ABZR86_RS16565at 3741.171 kb on + strand, within ABZR86_RS16565at 3741.171 kb on + strand, within ABZR86_RS16565at 3741.171 kb on + strand, within ABZR86_RS16565at 3741.171 kb on + strand, within ABZR86_RS16565at 3741.172 kb on - strand, within ABZR86_RS16565at 3741.172 kb on - strand, within ABZR86_RS16565at 3741.172 kb on - strand, within ABZR86_RS16565at 3741.172 kb on - strand, within ABZR86_RS16565at 3741.172 kb on - strand, within ABZR86_RS16565at 3741.174 kb on - strand, within ABZR86_RS16565at 3741.174 kb on - strand, within ABZR86_RS16565at 3741.174 kb on - strand, within ABZR86_RS16565at 3741.270 kb on + strand, within ABZR86_RS16565at 3741.270 kb on + strand, within ABZR86_RS16565at 3741.270 kb on + strand, within ABZR86_RS16565at 3741.271 kb on - strand, within ABZR86_RS16565at 3741.271 kb on - strand, within ABZR86_RS16565at 3741.278 kb on + strand, within ABZR86_RS16565at 3741.278 kb on + strand, within ABZR86_RS16565at 3741.279 kb on - strand, within ABZR86_RS16565at 3741.279 kb on - strand, within ABZR86_RS16565at 3741.353 kb on + strandat 3741.353 kb on + strandat 3741.353 kb on + strandat 3741.354 kb on - strandat 3741.354 kb on - strandat 3741.354 kb on - strandat 3741.410 kb on + strandat 3741.486 kb on + strandat 3741.486 kb on + strandat 3741.486 kb on + strandat 3741.486 kb on + strandat 3741.487 kb on - strandat 3741.487 kb on - strandat 3741.487 kb on - strandat 3741.496 kb on - strandat 3741.513 kb on + strandat 3741.514 kb on - strandat 3741.514 kb on - strandat 3741.602 kb on + strand, within ABZR86_RS16570at 3741.602 kb on + strand, within ABZR86_RS16570at 3741.603 kb on - strand, within ABZR86_RS16570at 3741.603 kb on - strand, within ABZR86_RS16570at 3741.603 kb on - strand, within ABZR86_RS16570at 3741.603 kb on - strand, within ABZR86_RS16570at 3741.603 kb on - strand, within ABZR86_RS16570at 3741.699 kb on + strand, within ABZR86_RS16570at 3741.700 kb on - strand, within ABZR86_RS16570at 3741.966 kb on + strand, within ABZR86_RS16570at 3741.982 kb on - strand, within ABZR86_RS16570at 3741.996 kb on + strand, within ABZR86_RS16570at 3741.996 kb on + strand, within ABZR86_RS16570at 3741.997 kb on - strand, within ABZR86_RS16570at 3741.997 kb on - strand, within ABZR86_RS16570at 3741.997 kb on - strand, within ABZR86_RS16570at 3742.071 kb on + strand, within ABZR86_RS16570at 3742.071 kb on + strand, within ABZR86_RS16570at 3742.177 kb on - strandat 3742.288 kb on - strand, within ABZR86_RS16575at 3742.352 kb on - strand, within ABZR86_RS16575at 3742.711 kb on + strandat 3742.712 kb on - strandat 3742.936 kb on + strand, within ABZR86_RS16580at 3742.937 kb on - strand, within ABZR86_RS16580at 3742.969 kb on + strand, within ABZR86_RS16580at 3742.978 kb on + strand, within ABZR86_RS16580at 3742.979 kb on - strand, within ABZR86_RS16580at 3743.054 kb on - strand, within ABZR86_RS16580

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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3,740,494 + ABZR86_RS16555 0.74 -0.4
3,740,494 + ABZR86_RS16555 0.74 -0.8
3,740,494 + ABZR86_RS16555 0.74 -0.1
3,740,495 - ABZR86_RS16555 0.74 +0.5
3,740,554 + ABZR86_RS16555 0.80 -1.3
3,740,555 - ABZR86_RS16555 0.80 -0.9
3,740,555 - ABZR86_RS16555 0.80 +0.4
3,740,555 - ABZR86_RS16555 0.80 +0.1
3,740,861 + ABZR86_RS16560 0.39 +0.5
3,740,966 + ABZR86_RS16560 0.75 +0.2
3,740,966 + ABZR86_RS16560 0.75 +0.5
3,740,966 + ABZR86_RS16560 0.75 +0.0
3,740,966 + ABZR86_RS16560 0.75 -0.6
3,740,967 - ABZR86_RS16560 0.75 -0.4
3,740,967 - ABZR86_RS16560 0.75 +0.1
3,741,016 + +1.0
3,741,016 + -0.5
3,741,062 + +1.4
3,741,062 + +0.0
3,741,171 + ABZR86_RS16565 0.43 +0.8
3,741,171 + ABZR86_RS16565 0.43 -0.2
3,741,171 + ABZR86_RS16565 0.43 +0.3
3,741,171 + ABZR86_RS16565 0.43 +0.3
3,741,171 + ABZR86_RS16565 0.43 -0.5
3,741,171 + ABZR86_RS16565 0.43 -0.2
3,741,171 + ABZR86_RS16565 0.43 -0.2
3,741,171 + ABZR86_RS16565 0.43 -0.3
3,741,172 - ABZR86_RS16565 0.43 -0.2
3,741,172 - ABZR86_RS16565 0.43 +0.3
3,741,172 - ABZR86_RS16565 0.43 +0.7
3,741,172 - ABZR86_RS16565 0.43 +0.0
3,741,172 - ABZR86_RS16565 0.43 -0.3
3,741,174 - ABZR86_RS16565 0.44 -0.0
3,741,174 - ABZR86_RS16565 0.44 +0.1
3,741,174 - ABZR86_RS16565 0.44 +0.1
3,741,270 + ABZR86_RS16565 0.81 -0.5
3,741,270 + ABZR86_RS16565 0.81 +0.1
3,741,270 + ABZR86_RS16565 0.81 +0.8
3,741,271 - ABZR86_RS16565 0.81 -0.5
3,741,271 - ABZR86_RS16565 0.81 -1.7
3,741,278 + ABZR86_RS16565 0.84 +0.1
3,741,278 + ABZR86_RS16565 0.84 -0.9
3,741,279 - ABZR86_RS16565 0.84 -0.8
3,741,279 - ABZR86_RS16565 0.84 -0.6
3,741,353 + +0.3
3,741,353 + +0.6
3,741,353 + -0.5
3,741,354 - +0.1
3,741,354 - -0.0
3,741,354 - -0.8
3,741,410 + -1.2
3,741,486 + +0.1
3,741,486 + +1.0
3,741,486 + +1.0
3,741,486 + -0.8
3,741,487 - -0.3
3,741,487 - +0.2
3,741,487 - -0.0
3,741,496 - -0.2
3,741,513 + -0.1
3,741,514 - +0.9
3,741,514 - -1.0
3,741,602 + ABZR86_RS16570 0.17 +1.9
3,741,602 + ABZR86_RS16570 0.17 -0.1
3,741,603 - ABZR86_RS16570 0.17 +0.2
3,741,603 - ABZR86_RS16570 0.17 +0.1
3,741,603 - ABZR86_RS16570 0.17 +0.1
3,741,603 - ABZR86_RS16570 0.17 -0.0
3,741,603 - ABZR86_RS16570 0.17 +0.9
3,741,699 + ABZR86_RS16570 0.31 -0.2
3,741,700 - ABZR86_RS16570 0.32 +0.2
3,741,966 + ABZR86_RS16570 0.70 -0.5
3,741,982 - ABZR86_RS16570 0.73 +0.8
3,741,996 + ABZR86_RS16570 0.75 -1.0
3,741,996 + ABZR86_RS16570 0.75 -0.5
3,741,997 - ABZR86_RS16570 0.75 +0.4
3,741,997 - ABZR86_RS16570 0.75 +0.3
3,741,997 - ABZR86_RS16570 0.75 +0.3
3,742,071 + ABZR86_RS16570 0.86 +0.0
3,742,071 + ABZR86_RS16570 0.86 +1.3
3,742,177 - +0.3
3,742,288 - ABZR86_RS16575 0.21 +0.1
3,742,352 - ABZR86_RS16575 0.33 -1.2
3,742,711 + -0.0
3,742,712 - -1.4
3,742,936 + ABZR86_RS16580 0.24 -0.4
3,742,937 - ABZR86_RS16580 0.24 +0.2
3,742,969 + ABZR86_RS16580 0.29 +0.1
3,742,978 + ABZR86_RS16580 0.31 +0.5
3,742,979 - ABZR86_RS16580 0.31 -0.3
3,743,054 - ABZR86_RS16580 0.42 -0.3

Or see this region's nucleotide sequence