Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15985

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15975 and ABZR86_RS15980 overlap by 4 nucleotidesABZR86_RS15980 and ABZR86_RS15985 are separated by 32 nucleotidesABZR86_RS15985 and ABZR86_RS15990 are separated by 253 nucleotidesABZR86_RS15990 and ABZR86_RS15995 are separated by 77 nucleotides ABZR86_RS15975: ABZR86_RS15975 - threonine synthase (EC 4.2.3.1) (from data), at 3,600,825 to 3,602,150 _RS15975 ABZR86_RS15980: ABZR86_RS15980 - homoserine kinase (EC 2.7.1.39) (from data), at 3,602,147 to 3,603,103 _RS15980 ABZR86_RS15985: ABZR86_RS15985 - homoserine dehydrogenase, at 3,603,136 to 3,604,200 _RS15985 ABZR86_RS15990: ABZR86_RS15990 - hypothetical protein, at 3,604,454 to 3,604,588 _RS15990 ABZR86_RS15995: ABZR86_RS15995 - DUF2501 domain-containing protein, at 3,604,666 to 3,605,187 _RS15995 Position (kb) 3603 3604 3605Strain fitness (log2 ratio) -1 0 1 2 3at 3602.429 kb on + strand, within ABZR86_RS15980at 3602.512 kb on - strand, within ABZR86_RS15980at 3602.715 kb on + strand, within ABZR86_RS15980at 3602.715 kb on + strand, within ABZR86_RS15980at 3602.716 kb on - strand, within ABZR86_RS15980at 3602.716 kb on - strand, within ABZR86_RS15980at 3603.240 kb on + strandat 3603.240 kb on + strandat 3603.240 kb on + strandat 3603.241 kb on - strandat 3603.603 kb on + strand, within ABZR86_RS15985at 3603.603 kb on + strand, within ABZR86_RS15985at 3603.603 kb on + strand, within ABZR86_RS15985at 3603.603 kb on + strand, within ABZR86_RS15985at 3603.604 kb on - strand, within ABZR86_RS15985at 3603.604 kb on - strand, within ABZR86_RS15985at 3603.604 kb on - strand, within ABZR86_RS15985at 3603.604 kb on - strand, within ABZR86_RS15985at 3603.604 kb on - strand, within ABZR86_RS15985at 3603.604 kb on - strand, within ABZR86_RS15985at 3603.605 kb on + strand, within ABZR86_RS15985at 3603.605 kb on + strand, within ABZR86_RS15985at 3603.606 kb on - strand, within ABZR86_RS15985at 3603.905 kb on + strand, within ABZR86_RS15985at 3603.906 kb on - strand, within ABZR86_RS15985at 3603.906 kb on - strand, within ABZR86_RS15985at 3604.382 kb on + strandat 3604.382 kb on + strandat 3604.383 kb on - strandat 3604.383 kb on - strandat 3604.431 kb on + strandat 3604.432 kb on - strandat 3604.432 kb on - strandat 3604.432 kb on - strandat 3604.432 kb on - strandat 3604.432 kb on - strandat 3604.432 kb on - strandat 3604.434 kb on + strandat 3604.434 kb on + strandat 3604.434 kb on + strandat 3604.434 kb on + strandat 3604.435 kb on - strandat 3604.435 kb on - strandat 3604.435 kb on - strandat 3604.435 kb on - strandat 3604.435 kb on - strandat 3604.435 kb on - strandat 3604.435 kb on - strandat 3604.543 kb on - strand, within ABZR86_RS15990at 3604.586 kb on + strandat 3604.613 kb on + strandat 3604.613 kb on + strandat 3604.614 kb on - strandat 3604.614 kb on - strandat 3604.614 kb on - strandat 3604.614 kb on - strandat 3604.834 kb on + strand, within ABZR86_RS15995at 3604.834 kb on + strand, within ABZR86_RS15995at 3604.835 kb on - strand, within ABZR86_RS15995at 3604.835 kb on - strand, within ABZR86_RS15995at 3604.835 kb on - strand, within ABZR86_RS15995at 3604.852 kb on + strand, within ABZR86_RS15995at 3604.852 kb on + strand, within ABZR86_RS15995at 3604.852 kb on + strand, within ABZR86_RS15995at 3604.853 kb on - strand, within ABZR86_RS15995at 3604.853 kb on - strand, within ABZR86_RS15995at 3605.001 kb on + strand, within ABZR86_RS15995at 3605.001 kb on + strand, within ABZR86_RS15995at 3605.002 kb on - strand, within ABZR86_RS15995at 3605.032 kb on + strand, within ABZR86_RS15995at 3605.032 kb on + strand, within ABZR86_RS15995at 3605.032 kb on + strand, within ABZR86_RS15995at 3605.032 kb on + strand, within ABZR86_RS15995at 3605.033 kb on - strand, within ABZR86_RS15995at 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.185 kb on + strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strandat 3605.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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3,602,429 + ABZR86_RS15980 0.29 +0.4
3,602,512 - ABZR86_RS15980 0.38 +1.3
3,602,715 + ABZR86_RS15980 0.59 +0.5
3,602,715 + ABZR86_RS15980 0.59 +0.0
3,602,716 - ABZR86_RS15980 0.59 +0.9
3,602,716 - ABZR86_RS15980 0.59 -0.3
3,603,240 + -0.0
3,603,240 + -0.9
3,603,240 + -0.2
3,603,241 - -0.1
3,603,603 + ABZR86_RS15985 0.44 +0.4
3,603,603 + ABZR86_RS15985 0.44 -0.4
3,603,603 + ABZR86_RS15985 0.44 +0.2
3,603,603 + ABZR86_RS15985 0.44 -0.2
3,603,604 - ABZR86_RS15985 0.44 -0.4
3,603,604 - ABZR86_RS15985 0.44 -0.7
3,603,604 - ABZR86_RS15985 0.44 +0.0
3,603,604 - ABZR86_RS15985 0.44 -0.6
3,603,604 - ABZR86_RS15985 0.44 -0.4
3,603,604 - ABZR86_RS15985 0.44 -0.2
3,603,605 + ABZR86_RS15985 0.44 +0.6
3,603,605 + ABZR86_RS15985 0.44 +0.2
3,603,606 - ABZR86_RS15985 0.44 -0.1
3,603,905 + ABZR86_RS15985 0.72 -0.4
3,603,906 - ABZR86_RS15985 0.72 +0.3
3,603,906 - ABZR86_RS15985 0.72 -0.2
3,604,382 + +0.0
3,604,382 + +0.2
3,604,383 - -0.1
3,604,383 - +0.4
3,604,431 + +0.3
3,604,432 - +0.7
3,604,432 - -0.4
3,604,432 - -0.4
3,604,432 - +0.7
3,604,432 - -0.5
3,604,432 - -0.3
3,604,434 + -0.0
3,604,434 + +0.5
3,604,434 + +0.4
3,604,434 + +3.7
3,604,435 - +0.3
3,604,435 - -0.8
3,604,435 - -0.4
3,604,435 - -1.6
3,604,435 - +0.5
3,604,435 - -0.3
3,604,435 - +0.9
3,604,543 - ABZR86_RS15990 0.66 +0.0
3,604,586 + -0.0
3,604,613 + +0.1
3,604,613 + -0.4
3,604,614 - +0.1
3,604,614 - -0.7
3,604,614 - -0.4
3,604,614 - +1.7
3,604,834 + ABZR86_RS15995 0.32 +0.7
3,604,834 + ABZR86_RS15995 0.32 -0.3
3,604,835 - ABZR86_RS15995 0.32 +0.1
3,604,835 - ABZR86_RS15995 0.32 -1.0
3,604,835 - ABZR86_RS15995 0.32 +0.5
3,604,852 + ABZR86_RS15995 0.36 -0.2
3,604,852 + ABZR86_RS15995 0.36 +0.4
3,604,852 + ABZR86_RS15995 0.36 -0.2
3,604,853 - ABZR86_RS15995 0.36 -0.2
3,604,853 - ABZR86_RS15995 0.36 +0.6
3,605,001 + ABZR86_RS15995 0.64 +0.1
3,605,001 + ABZR86_RS15995 0.64 -0.1
3,605,002 - ABZR86_RS15995 0.64 +0.5
3,605,032 + ABZR86_RS15995 0.70 -0.5
3,605,032 + ABZR86_RS15995 0.70 -0.3
3,605,032 + ABZR86_RS15995 0.70 -0.1
3,605,032 + ABZR86_RS15995 0.70 -0.1
3,605,033 - ABZR86_RS15995 0.70 -0.3
3,605,185 + +0.8
3,605,185 + -1.4
3,605,185 + +0.5
3,605,185 + +0.2
3,605,185 + -0.2
3,605,185 + +0.1
3,605,185 + -0.5
3,605,185 + -0.4
3,605,185 + +0.5
3,605,185 + +0.2
3,605,185 + +0.6
3,605,185 + -0.2
3,605,185 + -0.1
3,605,185 + +0.1
3,605,185 + +0.2
3,605,185 + +0.1
3,605,185 + +0.9
3,605,185 + -0.1
3,605,185 + +0.1
3,605,185 + +1.6
3,605,185 + -0.1
3,605,185 + +0.5
3,605,185 + +0.4
3,605,185 + -0.4
3,605,185 + +0.0
3,605,185 + +0.0
3,605,185 + -1.0
3,605,185 + -0.9
3,605,185 + -0.3
3,605,185 + +0.2
3,605,185 + +0.1
3,605,186 - -0.2
3,605,186 - -0.6
3,605,186 - -0.3
3,605,186 - +0.4
3,605,186 - -0.9
3,605,186 - +0.1
3,605,186 - +0.7
3,605,186 - +0.3
3,605,186 - -0.0
3,605,186 - -0.6
3,605,186 - +0.3
3,605,186 - -0.4
3,605,186 - +0.4
3,605,186 - +0.2
3,605,186 - +0.3
3,605,186 - +0.6
3,605,186 - +0.0
3,605,186 - +0.2
3,605,186 - -0.6
3,605,186 - -0.0
3,605,186 - -1.0
3,605,186 - +0.5
3,605,186 - +0.2
3,605,186 - +0.3
3,605,186 - -0.1

Or see this region's nucleotide sequence