Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS15975 and ABZR86_RS15980 overlap by 4 nucleotides ABZR86_RS15980 and ABZR86_RS15985 are separated by 32 nucleotides ABZR86_RS15985 and ABZR86_RS15990 are separated by 253 nucleotides ABZR86_RS15990 and ABZR86_RS15995 are separated by 77 nucleotides
ABZR86_RS15975: ABZR86_RS15975 - threonine synthase (EC 4.2.3.1) (from data) , at 3,600,825 to 3,602,150
_RS15975
ABZR86_RS15980: ABZR86_RS15980 - homoserine kinase (EC 2.7.1.39) (from data) , at 3,602,147 to 3,603,103
_RS15980
ABZR86_RS15985: ABZR86_RS15985 - homoserine dehydrogenase, at 3,603,136 to 3,604,200
_RS15985
ABZR86_RS15990: ABZR86_RS15990 - hypothetical protein, at 3,604,454 to 3,604,588
_RS15990
ABZR86_RS15995: ABZR86_RS15995 - DUF2501 domain-containing protein, at 3,604,666 to 3,605,187
_RS15995
Position (kb)
3603
3604
3605 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3602.429 kb on + strand, within ABZR86_RS15980 at 3602.512 kb on - strand, within ABZR86_RS15980 at 3602.715 kb on + strand, within ABZR86_RS15980 at 3602.715 kb on + strand, within ABZR86_RS15980 at 3602.716 kb on - strand, within ABZR86_RS15980 at 3602.716 kb on - strand, within ABZR86_RS15980 at 3603.240 kb on + strand at 3603.240 kb on + strand at 3603.240 kb on + strand at 3603.241 kb on - strand at 3603.603 kb on + strand, within ABZR86_RS15985 at 3603.603 kb on + strand, within ABZR86_RS15985 at 3603.603 kb on + strand, within ABZR86_RS15985 at 3603.603 kb on + strand, within ABZR86_RS15985 at 3603.604 kb on - strand, within ABZR86_RS15985 at 3603.604 kb on - strand, within ABZR86_RS15985 at 3603.604 kb on - strand, within ABZR86_RS15985 at 3603.604 kb on - strand, within ABZR86_RS15985 at 3603.604 kb on - strand, within ABZR86_RS15985 at 3603.604 kb on - strand, within ABZR86_RS15985 at 3603.605 kb on + strand, within ABZR86_RS15985 at 3603.605 kb on + strand, within ABZR86_RS15985 at 3603.606 kb on - strand, within ABZR86_RS15985 at 3603.905 kb on + strand, within ABZR86_RS15985 at 3603.906 kb on - strand, within ABZR86_RS15985 at 3603.906 kb on - strand, within ABZR86_RS15985 at 3604.382 kb on + strand at 3604.382 kb on + strand at 3604.383 kb on - strand at 3604.383 kb on - strand at 3604.431 kb on + strand at 3604.432 kb on - strand at 3604.432 kb on - strand at 3604.432 kb on - strand at 3604.432 kb on - strand at 3604.432 kb on - strand at 3604.432 kb on - strand at 3604.434 kb on + strand at 3604.434 kb on + strand at 3604.434 kb on + strand at 3604.434 kb on + strand at 3604.435 kb on - strand at 3604.435 kb on - strand at 3604.435 kb on - strand at 3604.435 kb on - strand at 3604.435 kb on - strand at 3604.435 kb on - strand at 3604.435 kb on - strand at 3604.543 kb on - strand, within ABZR86_RS15990 at 3604.586 kb on + strand at 3604.613 kb on + strand at 3604.613 kb on + strand at 3604.614 kb on - strand at 3604.614 kb on - strand at 3604.614 kb on - strand at 3604.614 kb on - strand at 3604.834 kb on + strand, within ABZR86_RS15995 at 3604.834 kb on + strand, within ABZR86_RS15995 at 3604.835 kb on - strand, within ABZR86_RS15995 at 3604.835 kb on - strand, within ABZR86_RS15995 at 3604.835 kb on - strand, within ABZR86_RS15995 at 3604.852 kb on + strand, within ABZR86_RS15995 at 3604.852 kb on + strand, within ABZR86_RS15995 at 3604.852 kb on + strand, within ABZR86_RS15995 at 3604.853 kb on - strand, within ABZR86_RS15995 at 3604.853 kb on - strand, within ABZR86_RS15995 at 3605.001 kb on + strand, within ABZR86_RS15995 at 3605.001 kb on + strand, within ABZR86_RS15995 at 3605.002 kb on - strand, within ABZR86_RS15995 at 3605.032 kb on + strand, within ABZR86_RS15995 at 3605.032 kb on + strand, within ABZR86_RS15995 at 3605.032 kb on + strand, within ABZR86_RS15995 at 3605.032 kb on + strand, within ABZR86_RS15995 at 3605.033 kb on - strand, within ABZR86_RS15995 at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.185 kb on + strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand at 3605.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 3,602,429 + ABZR86_RS15980 0.29 +0.4 3,602,512 - ABZR86_RS15980 0.38 +1.3 3,602,715 + ABZR86_RS15980 0.59 +0.5 3,602,715 + ABZR86_RS15980 0.59 +0.0 3,602,716 - ABZR86_RS15980 0.59 +0.9 3,602,716 - ABZR86_RS15980 0.59 -0.3 3,603,240 + -0.0 3,603,240 + -0.9 3,603,240 + -0.2 3,603,241 - -0.1 3,603,603 + ABZR86_RS15985 0.44 +0.4 3,603,603 + ABZR86_RS15985 0.44 -0.4 3,603,603 + ABZR86_RS15985 0.44 +0.2 3,603,603 + ABZR86_RS15985 0.44 -0.2 3,603,604 - ABZR86_RS15985 0.44 -0.4 3,603,604 - ABZR86_RS15985 0.44 -0.7 3,603,604 - ABZR86_RS15985 0.44 +0.0 3,603,604 - ABZR86_RS15985 0.44 -0.6 3,603,604 - ABZR86_RS15985 0.44 -0.4 3,603,604 - ABZR86_RS15985 0.44 -0.2 3,603,605 + ABZR86_RS15985 0.44 +0.6 3,603,605 + ABZR86_RS15985 0.44 +0.2 3,603,606 - ABZR86_RS15985 0.44 -0.1 3,603,905 + ABZR86_RS15985 0.72 -0.4 3,603,906 - ABZR86_RS15985 0.72 +0.3 3,603,906 - ABZR86_RS15985 0.72 -0.2 3,604,382 + +0.0 3,604,382 + +0.2 3,604,383 - -0.1 3,604,383 - +0.4 3,604,431 + +0.3 3,604,432 - +0.7 3,604,432 - -0.4 3,604,432 - -0.4 3,604,432 - +0.7 3,604,432 - -0.5 3,604,432 - -0.3 3,604,434 + -0.0 3,604,434 + +0.5 3,604,434 + +0.4 3,604,434 + +3.7 3,604,435 - +0.3 3,604,435 - -0.8 3,604,435 - -0.4 3,604,435 - -1.6 3,604,435 - +0.5 3,604,435 - -0.3 3,604,435 - +0.9 3,604,543 - ABZR86_RS15990 0.66 +0.0 3,604,586 + -0.0 3,604,613 + +0.1 3,604,613 + -0.4 3,604,614 - +0.1 3,604,614 - -0.7 3,604,614 - -0.4 3,604,614 - +1.7 3,604,834 + ABZR86_RS15995 0.32 +0.7 3,604,834 + ABZR86_RS15995 0.32 -0.3 3,604,835 - ABZR86_RS15995 0.32 +0.1 3,604,835 - ABZR86_RS15995 0.32 -1.0 3,604,835 - ABZR86_RS15995 0.32 +0.5 3,604,852 + ABZR86_RS15995 0.36 -0.2 3,604,852 + ABZR86_RS15995 0.36 +0.4 3,604,852 + ABZR86_RS15995 0.36 -0.2 3,604,853 - ABZR86_RS15995 0.36 -0.2 3,604,853 - ABZR86_RS15995 0.36 +0.6 3,605,001 + ABZR86_RS15995 0.64 +0.1 3,605,001 + ABZR86_RS15995 0.64 -0.1 3,605,002 - ABZR86_RS15995 0.64 +0.5 3,605,032 + ABZR86_RS15995 0.70 -0.5 3,605,032 + ABZR86_RS15995 0.70 -0.3 3,605,032 + ABZR86_RS15995 0.70 -0.1 3,605,032 + ABZR86_RS15995 0.70 -0.1 3,605,033 - ABZR86_RS15995 0.70 -0.3 3,605,185 + +0.8 3,605,185 + -1.4 3,605,185 + +0.5 3,605,185 + +0.2 3,605,185 + -0.2 3,605,185 + +0.1 3,605,185 + -0.5 3,605,185 + -0.4 3,605,185 + +0.5 3,605,185 + +0.2 3,605,185 + +0.6 3,605,185 + -0.2 3,605,185 + -0.1 3,605,185 + +0.1 3,605,185 + +0.2 3,605,185 + +0.1 3,605,185 + +0.9 3,605,185 + -0.1 3,605,185 + +0.1 3,605,185 + +1.6 3,605,185 + -0.1 3,605,185 + +0.5 3,605,185 + +0.4 3,605,185 + -0.4 3,605,185 + +0.0 3,605,185 + +0.0 3,605,185 + -1.0 3,605,185 + -0.9 3,605,185 + -0.3 3,605,185 + +0.2 3,605,185 + +0.1 3,605,186 - -0.2 3,605,186 - -0.6 3,605,186 - -0.3 3,605,186 - +0.4 3,605,186 - -0.9 3,605,186 - +0.1 3,605,186 - +0.7 3,605,186 - +0.3 3,605,186 - -0.0 3,605,186 - -0.6 3,605,186 - +0.3 3,605,186 - -0.4 3,605,186 - +0.4 3,605,186 - +0.2 3,605,186 - +0.3 3,605,186 - +0.6 3,605,186 - +0.0 3,605,186 - +0.2 3,605,186 - -0.6 3,605,186 - -0.0 3,605,186 - -1.0 3,605,186 - +0.5 3,605,186 - +0.2 3,605,186 - +0.3 3,605,186 - -0.1
Or see this region's nucleotide sequence