Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11815

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11810 and ABZR86_RS11815 are separated by 276 nucleotidesABZR86_RS11815 and ABZR86_RS11820 are separated by 91 nucleotidesABZR86_RS11820 and ABZR86_RS11825 are separated by 69 nucleotides ABZR86_RS11810: ABZR86_RS11810 - pilus assembly protein PilM, at 2,648,229 to 2,649,287 _RS11810 ABZR86_RS11815: ABZR86_RS11815 - penicillin-binding protein 1A, at 2,649,564 to 2,652,071 _RS11815 ABZR86_RS11820: ABZR86_RS11820 - hypothetical protein, at 2,652,163 to 2,652,837 _RS11820 ABZR86_RS11825: ABZR86_RS11825 - citrate synthase, at 2,652,907 to 2,654,202 _RS11825 Position (kb) 2649 2650 2651 2652 2653Strain fitness (log2 ratio) -1 0 1 2 3at 2648.575 kb on + strand, within ABZR86_RS11810at 2648.575 kb on + strand, within ABZR86_RS11810at 2648.575 kb on + strand, within ABZR86_RS11810at 2648.575 kb on + strand, within ABZR86_RS11810at 2648.678 kb on + strand, within ABZR86_RS11810at 2648.678 kb on + strand, within ABZR86_RS11810at 2648.678 kb on + strand, within ABZR86_RS11810at 2648.678 kb on + strand, within ABZR86_RS11810at 2648.678 kb on + strand, within ABZR86_RS11810at 2648.678 kb on + strand, within ABZR86_RS11810at 2648.678 kb on + strand, within ABZR86_RS11810at 2648.678 kb on + strand, within ABZR86_RS11810at 2648.679 kb on - strand, within ABZR86_RS11810at 2648.679 kb on - strand, within ABZR86_RS11810at 2648.679 kb on - strand, within ABZR86_RS11810at 2648.950 kb on + strand, within ABZR86_RS11810at 2648.950 kb on + strand, within ABZR86_RS11810at 2648.951 kb on - strand, within ABZR86_RS11810at 2648.951 kb on - strand, within ABZR86_RS11810at 2648.951 kb on - strand, within ABZR86_RS11810at 2648.951 kb on - strand, within ABZR86_RS11810at 2648.951 kb on - strand, within ABZR86_RS11810at 2649.175 kb on + strand, within ABZR86_RS11810at 2649.176 kb on - strand, within ABZR86_RS11810at 2649.275 kb on + strandat 2649.275 kb on + strandat 2649.275 kb on + strandat 2649.275 kb on + strandat 2649.276 kb on - strandat 2649.276 kb on - strandat 2649.323 kb on + strandat 2649.323 kb on + strandat 2649.323 kb on + strandat 2649.324 kb on - strandat 2649.324 kb on - strandat 2649.324 kb on - strandat 2649.350 kb on - strandat 2649.350 kb on - strandat 2649.459 kb on + strandat 2649.459 kb on + strandat 2649.460 kb on - strandat 2649.460 kb on - strandat 2649.514 kb on + strandat 2649.514 kb on + strandat 2649.514 kb on + strandat 2649.514 kb on + strandat 2649.514 kb on + strandat 2649.515 kb on - strandat 2649.515 kb on - strandat 2649.515 kb on - strandat 2649.515 kb on - strandat 2649.515 kb on - strandat 2649.515 kb on - strandat 2649.515 kb on - strandat 2649.515 kb on - strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.520 kb on + strandat 2649.521 kb on - strandat 2649.521 kb on - strandat 2649.521 kb on - strandat 2649.521 kb on - strandat 2649.521 kb on - strandat 2649.522 kb on + strandat 2649.523 kb on - strandat 2649.652 kb on - strandat 2649.699 kb on + strandat 2650.098 kb on + strand, within ABZR86_RS11815at 2650.122 kb on + strand, within ABZR86_RS11815at 2650.278 kb on + strand, within ABZR86_RS11815at 2650.279 kb on - strand, within ABZR86_RS11815at 2650.366 kb on - strand, within ABZR86_RS11815at 2650.431 kb on + strand, within ABZR86_RS11815at 2650.432 kb on - strand, within ABZR86_RS11815at 2650.432 kb on - strand, within ABZR86_RS11815at 2650.432 kb on - strand, within ABZR86_RS11815at 2650.599 kb on + strand, within ABZR86_RS11815at 2650.600 kb on - strand, within ABZR86_RS11815at 2650.602 kb on - strand, within ABZR86_RS11815at 2650.666 kb on - strand, within ABZR86_RS11815at 2650.725 kb on + strand, within ABZR86_RS11815at 2650.726 kb on - strand, within ABZR86_RS11815at 2650.726 kb on - strand, within ABZR86_RS11815at 2650.726 kb on - strand, within ABZR86_RS11815at 2650.766 kb on - strand, within ABZR86_RS11815at 2650.983 kb on + strand, within ABZR86_RS11815at 2650.983 kb on + strand, within ABZR86_RS11815at 2650.983 kb on + strand, within ABZR86_RS11815at 2650.984 kb on - strand, within ABZR86_RS11815at 2650.984 kb on - strand, within ABZR86_RS11815at 2651.346 kb on + strand, within ABZR86_RS11815at 2651.347 kb on - strand, within ABZR86_RS11815at 2651.388 kb on + strand, within ABZR86_RS11815at 2651.771 kb on - strand, within ABZR86_RS11815at 2651.777 kb on - strand, within ABZR86_RS11815at 2651.850 kb on + strandat 2651.850 kb on + strandat 2651.851 kb on - strandat 2651.851 kb on - strandat 2651.851 kb on - strandat 2651.851 kb on - strandat 2651.851 kb on - strandat 2652.057 kb on + strandat 2652.058 kb on - strandat 2652.460 kb on + strand, within ABZR86_RS11820at 2652.461 kb on - strand, within ABZR86_RS11820at 2652.638 kb on - strand, within ABZR86_RS11820

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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2,648,575 + ABZR86_RS11810 0.33 -0.6
2,648,575 + ABZR86_RS11810 0.33 -0.5
2,648,575 + ABZR86_RS11810 0.33 -0.1
2,648,575 + ABZR86_RS11810 0.33 -0.2
2,648,678 + ABZR86_RS11810 0.42 +0.4
2,648,678 + ABZR86_RS11810 0.42 +0.7
2,648,678 + ABZR86_RS11810 0.42 -0.1
2,648,678 + ABZR86_RS11810 0.42 -1.6
2,648,678 + ABZR86_RS11810 0.42 +0.0
2,648,678 + ABZR86_RS11810 0.42 -0.4
2,648,678 + ABZR86_RS11810 0.42 +0.5
2,648,678 + ABZR86_RS11810 0.42 +0.1
2,648,679 - ABZR86_RS11810 0.42 -0.4
2,648,679 - ABZR86_RS11810 0.42 +0.1
2,648,679 - ABZR86_RS11810 0.42 -0.1
2,648,950 + ABZR86_RS11810 0.68 +0.5
2,648,950 + ABZR86_RS11810 0.68 +1.8
2,648,951 - ABZR86_RS11810 0.68 -0.0
2,648,951 - ABZR86_RS11810 0.68 -0.0
2,648,951 - ABZR86_RS11810 0.68 +0.7
2,648,951 - ABZR86_RS11810 0.68 +0.2
2,648,951 - ABZR86_RS11810 0.68 +0.2
2,649,175 + ABZR86_RS11810 0.89 -0.2
2,649,176 - ABZR86_RS11810 0.89 +0.1
2,649,275 + -0.4
2,649,275 + -0.5
2,649,275 + -0.2
2,649,275 + +0.2
2,649,276 - +0.7
2,649,276 - -0.6
2,649,323 + -0.5
2,649,323 + -0.2
2,649,323 + +0.4
2,649,324 - -0.9
2,649,324 - -1.1
2,649,324 - -0.2
2,649,350 - +0.3
2,649,350 - +0.6
2,649,459 + +0.1
2,649,459 + -0.2
2,649,460 - +0.2
2,649,460 - -0.4
2,649,514 + +0.1
2,649,514 + +1.0
2,649,514 + +0.1
2,649,514 + -1.3
2,649,514 + -0.5
2,649,515 - +0.2
2,649,515 - +0.0
2,649,515 - -0.4
2,649,515 - -0.5
2,649,515 - -0.2
2,649,515 - -0.1
2,649,515 - +0.7
2,649,515 - +0.1
2,649,520 + -1.2
2,649,520 + -0.6
2,649,520 + -0.2
2,649,520 + -1.0
2,649,520 + +0.2
2,649,520 + -1.0
2,649,520 + -0.3
2,649,520 + -0.7
2,649,520 + +0.3
2,649,520 + -0.7
2,649,520 + +0.6
2,649,520 + -0.4
2,649,520 + -0.3
2,649,521 - -0.3
2,649,521 - +0.5
2,649,521 - -0.1
2,649,521 - -0.5
2,649,521 - +0.1
2,649,522 + -0.2
2,649,523 - +0.3
2,649,652 - +2.8
2,649,699 + +0.8
2,650,098 + ABZR86_RS11815 0.21 +1.1
2,650,122 + ABZR86_RS11815 0.22 +1.2
2,650,278 + ABZR86_RS11815 0.28 +1.5
2,650,279 - ABZR86_RS11815 0.29 +0.3
2,650,366 - ABZR86_RS11815 0.32 +0.1
2,650,431 + ABZR86_RS11815 0.35 -0.2
2,650,432 - ABZR86_RS11815 0.35 +0.6
2,650,432 - ABZR86_RS11815 0.35 +1.6
2,650,432 - ABZR86_RS11815 0.35 +0.6
2,650,599 + ABZR86_RS11815 0.41 +1.4
2,650,600 - ABZR86_RS11815 0.41 +0.8
2,650,602 - ABZR86_RS11815 0.41 +1.0
2,650,666 - ABZR86_RS11815 0.44 -0.9
2,650,725 + ABZR86_RS11815 0.46 +2.5
2,650,726 - ABZR86_RS11815 0.46 +2.7
2,650,726 - ABZR86_RS11815 0.46 +0.9
2,650,726 - ABZR86_RS11815 0.46 +0.7
2,650,766 - ABZR86_RS11815 0.48 +1.3
2,650,983 + ABZR86_RS11815 0.57 +0.1
2,650,983 + ABZR86_RS11815 0.57 +1.3
2,650,983 + ABZR86_RS11815 0.57 +0.8
2,650,984 - ABZR86_RS11815 0.57 +0.9
2,650,984 - ABZR86_RS11815 0.57 -0.6
2,651,346 + ABZR86_RS11815 0.71 +1.4
2,651,347 - ABZR86_RS11815 0.71 +1.7
2,651,388 + ABZR86_RS11815 0.73 -0.5
2,651,771 - ABZR86_RS11815 0.88 -0.2
2,651,777 - ABZR86_RS11815 0.88 +0.5
2,651,850 + +1.2
2,651,850 + +2.8
2,651,851 - +0.4
2,651,851 - +0.5
2,651,851 - +0.7
2,651,851 - +1.1
2,651,851 - +1.2
2,652,057 + -0.2
2,652,058 - +0.5
2,652,460 + ABZR86_RS11820 0.44 -0.2
2,652,461 - ABZR86_RS11820 0.44 -0.2
2,652,638 - ABZR86_RS11820 0.70 -0.3

Or see this region's nucleotide sequence