Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS11810 and ABZR86_RS11815 are separated by 276 nucleotides ABZR86_RS11815 and ABZR86_RS11820 are separated by 91 nucleotides ABZR86_RS11820 and ABZR86_RS11825 are separated by 69 nucleotides
ABZR86_RS11810: ABZR86_RS11810 - pilus assembly protein PilM, at 2,648,229 to 2,649,287
_RS11810
ABZR86_RS11815: ABZR86_RS11815 - penicillin-binding protein 1A, at 2,649,564 to 2,652,071
_RS11815
ABZR86_RS11820: ABZR86_RS11820 - hypothetical protein, at 2,652,163 to 2,652,837
_RS11820
ABZR86_RS11825: ABZR86_RS11825 - citrate synthase, at 2,652,907 to 2,654,202
_RS11825
Position (kb)
2649
2650
2651
2652
2653 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2648.575 kb on + strand, within ABZR86_RS11810 at 2648.575 kb on + strand, within ABZR86_RS11810 at 2648.575 kb on + strand, within ABZR86_RS11810 at 2648.575 kb on + strand, within ABZR86_RS11810 at 2648.678 kb on + strand, within ABZR86_RS11810 at 2648.678 kb on + strand, within ABZR86_RS11810 at 2648.678 kb on + strand, within ABZR86_RS11810 at 2648.678 kb on + strand, within ABZR86_RS11810 at 2648.678 kb on + strand, within ABZR86_RS11810 at 2648.678 kb on + strand, within ABZR86_RS11810 at 2648.678 kb on + strand, within ABZR86_RS11810 at 2648.678 kb on + strand, within ABZR86_RS11810 at 2648.679 kb on - strand, within ABZR86_RS11810 at 2648.679 kb on - strand, within ABZR86_RS11810 at 2648.679 kb on - strand, within ABZR86_RS11810 at 2648.950 kb on + strand, within ABZR86_RS11810 at 2648.950 kb on + strand, within ABZR86_RS11810 at 2648.951 kb on - strand, within ABZR86_RS11810 at 2648.951 kb on - strand, within ABZR86_RS11810 at 2648.951 kb on - strand, within ABZR86_RS11810 at 2648.951 kb on - strand, within ABZR86_RS11810 at 2648.951 kb on - strand, within ABZR86_RS11810 at 2649.175 kb on + strand, within ABZR86_RS11810 at 2649.176 kb on - strand, within ABZR86_RS11810 at 2649.275 kb on + strand at 2649.275 kb on + strand at 2649.275 kb on + strand at 2649.275 kb on + strand at 2649.276 kb on - strand at 2649.276 kb on - strand at 2649.323 kb on + strand at 2649.323 kb on + strand at 2649.323 kb on + strand at 2649.324 kb on - strand at 2649.324 kb on - strand at 2649.324 kb on - strand at 2649.350 kb on - strand at 2649.350 kb on - strand at 2649.459 kb on + strand at 2649.459 kb on + strand at 2649.460 kb on - strand at 2649.460 kb on - strand at 2649.514 kb on + strand at 2649.514 kb on + strand at 2649.514 kb on + strand at 2649.514 kb on + strand at 2649.514 kb on + strand at 2649.515 kb on - strand at 2649.515 kb on - strand at 2649.515 kb on - strand at 2649.515 kb on - strand at 2649.515 kb on - strand at 2649.515 kb on - strand at 2649.515 kb on - strand at 2649.515 kb on - strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.520 kb on + strand at 2649.521 kb on - strand at 2649.521 kb on - strand at 2649.521 kb on - strand at 2649.521 kb on - strand at 2649.521 kb on - strand at 2649.522 kb on + strand at 2649.523 kb on - strand at 2649.652 kb on - strand at 2649.699 kb on + strand at 2650.098 kb on + strand, within ABZR86_RS11815 at 2650.122 kb on + strand, within ABZR86_RS11815 at 2650.278 kb on + strand, within ABZR86_RS11815 at 2650.279 kb on - strand, within ABZR86_RS11815 at 2650.366 kb on - strand, within ABZR86_RS11815 at 2650.431 kb on + strand, within ABZR86_RS11815 at 2650.432 kb on - strand, within ABZR86_RS11815 at 2650.432 kb on - strand, within ABZR86_RS11815 at 2650.432 kb on - strand, within ABZR86_RS11815 at 2650.599 kb on + strand, within ABZR86_RS11815 at 2650.600 kb on - strand, within ABZR86_RS11815 at 2650.602 kb on - strand, within ABZR86_RS11815 at 2650.666 kb on - strand, within ABZR86_RS11815 at 2650.725 kb on + strand, within ABZR86_RS11815 at 2650.726 kb on - strand, within ABZR86_RS11815 at 2650.726 kb on - strand, within ABZR86_RS11815 at 2650.726 kb on - strand, within ABZR86_RS11815 at 2650.766 kb on - strand, within ABZR86_RS11815 at 2650.983 kb on + strand, within ABZR86_RS11815 at 2650.983 kb on + strand, within ABZR86_RS11815 at 2650.983 kb on + strand, within ABZR86_RS11815 at 2650.984 kb on - strand, within ABZR86_RS11815 at 2650.984 kb on - strand, within ABZR86_RS11815 at 2651.346 kb on + strand, within ABZR86_RS11815 at 2651.347 kb on - strand, within ABZR86_RS11815 at 2651.388 kb on + strand, within ABZR86_RS11815 at 2651.771 kb on - strand, within ABZR86_RS11815 at 2651.777 kb on - strand, within ABZR86_RS11815 at 2651.850 kb on + strand at 2651.850 kb on + strand at 2651.851 kb on - strand at 2651.851 kb on - strand at 2651.851 kb on - strand at 2651.851 kb on - strand at 2651.851 kb on - strand at 2652.057 kb on + strand at 2652.058 kb on - strand at 2652.460 kb on + strand, within ABZR86_RS11820 at 2652.461 kb on - strand, within ABZR86_RS11820 at 2652.638 kb on - strand, within ABZR86_RS11820
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 2,648,575 + ABZR86_RS11810 0.33 -0.6 2,648,575 + ABZR86_RS11810 0.33 -0.5 2,648,575 + ABZR86_RS11810 0.33 -0.1 2,648,575 + ABZR86_RS11810 0.33 -0.2 2,648,678 + ABZR86_RS11810 0.42 +0.4 2,648,678 + ABZR86_RS11810 0.42 +0.7 2,648,678 + ABZR86_RS11810 0.42 -0.1 2,648,678 + ABZR86_RS11810 0.42 -1.6 2,648,678 + ABZR86_RS11810 0.42 +0.0 2,648,678 + ABZR86_RS11810 0.42 -0.4 2,648,678 + ABZR86_RS11810 0.42 +0.5 2,648,678 + ABZR86_RS11810 0.42 +0.1 2,648,679 - ABZR86_RS11810 0.42 -0.4 2,648,679 - ABZR86_RS11810 0.42 +0.1 2,648,679 - ABZR86_RS11810 0.42 -0.1 2,648,950 + ABZR86_RS11810 0.68 +0.5 2,648,950 + ABZR86_RS11810 0.68 +1.8 2,648,951 - ABZR86_RS11810 0.68 -0.0 2,648,951 - ABZR86_RS11810 0.68 -0.0 2,648,951 - ABZR86_RS11810 0.68 +0.7 2,648,951 - ABZR86_RS11810 0.68 +0.2 2,648,951 - ABZR86_RS11810 0.68 +0.2 2,649,175 + ABZR86_RS11810 0.89 -0.2 2,649,176 - ABZR86_RS11810 0.89 +0.1 2,649,275 + -0.4 2,649,275 + -0.5 2,649,275 + -0.2 2,649,275 + +0.2 2,649,276 - +0.7 2,649,276 - -0.6 2,649,323 + -0.5 2,649,323 + -0.2 2,649,323 + +0.4 2,649,324 - -0.9 2,649,324 - -1.1 2,649,324 - -0.2 2,649,350 - +0.3 2,649,350 - +0.6 2,649,459 + +0.1 2,649,459 + -0.2 2,649,460 - +0.2 2,649,460 - -0.4 2,649,514 + +0.1 2,649,514 + +1.0 2,649,514 + +0.1 2,649,514 + -1.3 2,649,514 + -0.5 2,649,515 - +0.2 2,649,515 - +0.0 2,649,515 - -0.4 2,649,515 - -0.5 2,649,515 - -0.2 2,649,515 - -0.1 2,649,515 - +0.7 2,649,515 - +0.1 2,649,520 + -1.2 2,649,520 + -0.6 2,649,520 + -0.2 2,649,520 + -1.0 2,649,520 + +0.2 2,649,520 + -1.0 2,649,520 + -0.3 2,649,520 + -0.7 2,649,520 + +0.3 2,649,520 + -0.7 2,649,520 + +0.6 2,649,520 + -0.4 2,649,520 + -0.3 2,649,521 - -0.3 2,649,521 - +0.5 2,649,521 - -0.1 2,649,521 - -0.5 2,649,521 - +0.1 2,649,522 + -0.2 2,649,523 - +0.3 2,649,652 - +2.8 2,649,699 + +0.8 2,650,098 + ABZR86_RS11815 0.21 +1.1 2,650,122 + ABZR86_RS11815 0.22 +1.2 2,650,278 + ABZR86_RS11815 0.28 +1.5 2,650,279 - ABZR86_RS11815 0.29 +0.3 2,650,366 - ABZR86_RS11815 0.32 +0.1 2,650,431 + ABZR86_RS11815 0.35 -0.2 2,650,432 - ABZR86_RS11815 0.35 +0.6 2,650,432 - ABZR86_RS11815 0.35 +1.6 2,650,432 - ABZR86_RS11815 0.35 +0.6 2,650,599 + ABZR86_RS11815 0.41 +1.4 2,650,600 - ABZR86_RS11815 0.41 +0.8 2,650,602 - ABZR86_RS11815 0.41 +1.0 2,650,666 - ABZR86_RS11815 0.44 -0.9 2,650,725 + ABZR86_RS11815 0.46 +2.5 2,650,726 - ABZR86_RS11815 0.46 +2.7 2,650,726 - ABZR86_RS11815 0.46 +0.9 2,650,726 - ABZR86_RS11815 0.46 +0.7 2,650,766 - ABZR86_RS11815 0.48 +1.3 2,650,983 + ABZR86_RS11815 0.57 +0.1 2,650,983 + ABZR86_RS11815 0.57 +1.3 2,650,983 + ABZR86_RS11815 0.57 +0.8 2,650,984 - ABZR86_RS11815 0.57 +0.9 2,650,984 - ABZR86_RS11815 0.57 -0.6 2,651,346 + ABZR86_RS11815 0.71 +1.4 2,651,347 - ABZR86_RS11815 0.71 +1.7 2,651,388 + ABZR86_RS11815 0.73 -0.5 2,651,771 - ABZR86_RS11815 0.88 -0.2 2,651,777 - ABZR86_RS11815 0.88 +0.5 2,651,850 + +1.2 2,651,850 + +2.8 2,651,851 - +0.4 2,651,851 - +0.5 2,651,851 - +0.7 2,651,851 - +1.1 2,651,851 - +1.2 2,652,057 + -0.2 2,652,058 - +0.5 2,652,460 + ABZR86_RS11820 0.44 -0.2 2,652,461 - ABZR86_RS11820 0.44 -0.2 2,652,638 - ABZR86_RS11820 0.70 -0.3
Or see this region's nucleotide sequence