Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11725

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11715 and ABZR86_RS11720 are separated by 11 nucleotidesABZR86_RS11720 and ABZR86_RS11725 are separated by 65 nucleotidesABZR86_RS11725 and ABZR86_RS11730 are separated by 261 nucleotides ABZR86_RS11715: ABZR86_RS11715 - FtsX-like permease family protein, at 2,625,179 to 2,626,342 _RS11715 ABZR86_RS11720: ABZR86_RS11720 - ABC transporter ATP-binding protein, at 2,626,354 to 2,627,040 _RS11720 ABZR86_RS11725: ABZR86_RS11725 - efflux RND transporter periplasmic adaptor subunit, at 2,627,106 to 2,628,347 _RS11725 ABZR86_RS11730: ABZR86_RS11730 - fumarylacetoacetate hydrolase family protein, at 2,628,609 to 2,629,295 _RS11730 Position (kb) 2627 2628 2629Strain fitness (log2 ratio) -2 -1 0 1at 2626.758 kb on - strand, within ABZR86_RS11720at 2627.219 kb on - strandat 2627.219 kb on - strandat 2627.563 kb on + strand, within ABZR86_RS11725at 2627.563 kb on + strand, within ABZR86_RS11725at 2627.564 kb on - strand, within ABZR86_RS11725at 2627.564 kb on - strand, within ABZR86_RS11725at 2627.564 kb on - strand, within ABZR86_RS11725at 2627.564 kb on - strand, within ABZR86_RS11725at 2627.564 kb on - strand, within ABZR86_RS11725at 2627.729 kb on - strand, within ABZR86_RS11725at 2627.729 kb on - strand, within ABZR86_RS11725at 2628.491 kb on + strandat 2628.492 kb on - strandat 2628.492 kb on - strandat 2628.492 kb on - strandat 2628.525 kb on + strandat 2628.526 kb on - strandat 2628.551 kb on - strandat 2628.566 kb on + strandat 2628.566 kb on + strandat 2628.566 kb on + strandat 2628.566 kb on + strandat 2628.566 kb on + strandat 2628.566 kb on + strandat 2628.567 kb on - strandat 2628.567 kb on - strandat 2628.589 kb on + strandat 2628.590 kb on - strandat 2628.615 kb on + strandat 2628.615 kb on + strandat 2628.615 kb on + strandat 2628.615 kb on + strandat 2628.615 kb on + strandat 2628.615 kb on + strandat 2628.616 kb on - strandat 2628.616 kb on - strandat 2628.616 kb on - strandat 2628.616 kb on - strandat 2628.616 kb on - strandat 2628.654 kb on + strandat 2628.654 kb on + strandat 2628.654 kb on + strandat 2628.709 kb on - strand, within ABZR86_RS11730at 2629.291 kb on + strandat 2629.291 kb on + strandat 2629.291 kb on + strandat 2629.292 kb on - strandat 2629.292 kb on - strandat 2629.292 kb on - strandat 2629.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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2,626,758 - ABZR86_RS11720 0.59 -0.6
2,627,219 - -0.7
2,627,219 - -0.2
2,627,563 + ABZR86_RS11725 0.37 -0.4
2,627,563 + ABZR86_RS11725 0.37 -0.1
2,627,564 - ABZR86_RS11725 0.37 +0.1
2,627,564 - ABZR86_RS11725 0.37 -0.6
2,627,564 - ABZR86_RS11725 0.37 -0.9
2,627,564 - ABZR86_RS11725 0.37 -0.1
2,627,564 - ABZR86_RS11725 0.37 +0.2
2,627,729 - ABZR86_RS11725 0.50 -1.5
2,627,729 - ABZR86_RS11725 0.50 +0.1
2,628,491 + +0.1
2,628,492 - -0.3
2,628,492 - -0.6
2,628,492 - +0.5
2,628,525 + -0.7
2,628,526 - -0.3
2,628,551 - +0.1
2,628,566 + +0.1
2,628,566 + -0.0
2,628,566 + +0.0
2,628,566 + -0.8
2,628,566 + +0.4
2,628,566 + -0.3
2,628,567 - -0.8
2,628,567 - +0.2
2,628,589 + -2.5
2,628,590 - +0.6
2,628,615 + -0.6
2,628,615 + +1.0
2,628,615 + -0.2
2,628,615 + +0.1
2,628,615 + -0.6
2,628,615 + -0.5
2,628,616 - -0.9
2,628,616 - -0.7
2,628,616 - -0.5
2,628,616 - -0.1
2,628,616 - +0.5
2,628,654 + -0.2
2,628,654 + -0.1
2,628,654 + -0.2
2,628,709 - ABZR86_RS11730 0.15 -0.0
2,629,291 + +0.7
2,629,291 + -0.2
2,629,291 + -0.1
2,629,292 - +1.6
2,629,292 - -1.2
2,629,292 - -0.1
2,629,293 + -0.8

Or see this region's nucleotide sequence