Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11025

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11020 and ABZR86_RS11025 are separated by 13 nucleotidesABZR86_RS11025 and ABZR86_RS11030 are separated by 404 nucleotides ABZR86_RS11020: ABZR86_RS11020 - succinate--CoA ligase subunit alpha, at 2,447,391 to 2,448,266 _RS11020 ABZR86_RS11025: ABZR86_RS11025 - ADP-forming succinate--CoA ligase subunit beta, at 2,448,280 to 2,449,440 _RS11025 ABZR86_RS11030: ABZR86_RS11030 - HAMP domain-containing sensor histidine kinase, at 2,449,845 to 2,451,491 _RS11030 Position (kb) 2448 2449 2450Strain fitness (log2 ratio) -1 0 1at 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.393 kb on - strandat 2447.393 kb on - strandat 2449.446 kb on - strandat 2449.601 kb on - strandat 2449.601 kb on - strandat 2449.643 kb on - strandat 2449.643 kb on - strandat 2449.643 kb on - strandat 2449.643 kb on - strandat 2449.643 kb on - strandat 2449.643 kb on - strandat 2449.643 kb on - strandat 2449.768 kb on + strandat 2449.804 kb on + strandat 2449.804 kb on + strandat 2449.804 kb on + strandat 2449.804 kb on + strandat 2449.805 kb on - strandat 2449.805 kb on - strandat 2449.805 kb on - strandat 2449.805 kb on - strandat 2449.805 kb on - strandat 2449.805 kb on - strandat 2449.805 kb on - strandat 2449.806 kb on + strandat 2449.806 kb on + strandat 2449.807 kb on - strandat 2449.807 kb on - strandat 2449.807 kb on - strandat 2449.807 kb on - strandat 2449.853 kb on + strandat 2449.926 kb on + strandat 2449.927 kb on - strandat 2449.953 kb on + strandat 2449.953 kb on + strandat 2449.954 kb on - strandat 2450.266 kb on + strand, within ABZR86_RS11030at 2450.266 kb on + strand, within ABZR86_RS11030at 2450.267 kb on - strand, within ABZR86_RS11030at 2450.267 kb on - strand, within ABZR86_RS11030at 2450.267 kb on - strand, within ABZR86_RS11030at 2450.358 kb on + strand, within ABZR86_RS11030at 2450.359 kb on - strand, within ABZR86_RS11030at 2450.359 kb on - strand, within ABZR86_RS11030at 2450.359 kb on - strand, within ABZR86_RS11030at 2450.359 kb on - strand, within ABZR86_RS11030at 2450.382 kb on + strand, within ABZR86_RS11030at 2450.382 kb on + strand, within ABZR86_RS11030at 2450.382 kb on + strand, within ABZR86_RS11030at 2450.382 kb on + strand, within ABZR86_RS11030at 2450.382 kb on + strand, within ABZR86_RS11030at 2450.382 kb on + strand, within ABZR86_RS11030at 2450.383 kb on - strand, within ABZR86_RS11030at 2450.383 kb on - strand, within ABZR86_RS11030

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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2,447,392 + -0.3
2,447,392 + +1.0
2,447,392 + +1.4
2,447,392 + +0.5
2,447,392 + +1.4
2,447,392 + +1.0
2,447,392 + +1.5
2,447,393 - +1.0
2,447,393 - +1.4
2,449,446 - +0.2
2,449,601 - +0.2
2,449,601 - +0.5
2,449,643 - +0.2
2,449,643 - -0.2
2,449,643 - -0.6
2,449,643 - +0.7
2,449,643 - +0.1
2,449,643 - -0.1
2,449,643 - +0.1
2,449,768 + -0.2
2,449,804 + -1.2
2,449,804 + -0.4
2,449,804 + +0.1
2,449,804 + -0.0
2,449,805 - -0.5
2,449,805 - -0.5
2,449,805 - -0.1
2,449,805 - -0.2
2,449,805 - +1.2
2,449,805 - +0.2
2,449,805 - -0.5
2,449,806 + -0.4
2,449,806 + +0.0
2,449,807 - -0.7
2,449,807 - +0.4
2,449,807 - +0.3
2,449,807 - -1.7
2,449,853 + -0.8
2,449,926 + -0.0
2,449,927 - +0.3
2,449,953 + -0.3
2,449,953 + -0.2
2,449,954 - +0.1
2,450,266 + ABZR86_RS11030 0.26 +0.0
2,450,266 + ABZR86_RS11030 0.26 +0.9
2,450,267 - ABZR86_RS11030 0.26 -1.0
2,450,267 - ABZR86_RS11030 0.26 +0.4
2,450,267 - ABZR86_RS11030 0.26 -0.0
2,450,358 + ABZR86_RS11030 0.31 -0.2
2,450,359 - ABZR86_RS11030 0.31 -0.2
2,450,359 - ABZR86_RS11030 0.31 +0.1
2,450,359 - ABZR86_RS11030 0.31 +0.6
2,450,359 - ABZR86_RS11030 0.31 +0.6
2,450,382 + ABZR86_RS11030 0.33 +0.2
2,450,382 + ABZR86_RS11030 0.33 +0.2
2,450,382 + ABZR86_RS11030 0.33 +0.5
2,450,382 + ABZR86_RS11030 0.33 -0.3
2,450,382 + ABZR86_RS11030 0.33 +0.3
2,450,382 + ABZR86_RS11030 0.33 +0.4
2,450,383 - ABZR86_RS11030 0.33 +0.5
2,450,383 - ABZR86_RS11030 0.33 +0.1

Or see this region's nucleotide sequence