Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS11010 and ABZR86_RS11015 are separated by 4 nucleotides ABZR86_RS11015 and ABZR86_RS11020 are separated by 228 nucleotides ABZR86_RS11020 and ABZR86_RS11025 are separated by 13 nucleotides
ABZR86_RS11010: ABZR86_RS11010 - fimbria/pilus periplasmic chaperone, at 2,445,923 to 2,446,642
_RS11010
ABZR86_RS11015: ABZR86_RS11015 - spore coat U domain-containing protein, at 2,446,647 to 2,447,162
_RS11015
ABZR86_RS11020: ABZR86_RS11020 - succinate--CoA ligase subunit alpha, at 2,447,391 to 2,448,266
_RS11020
ABZR86_RS11025: ABZR86_RS11025 - ADP-forming succinate--CoA ligase subunit beta, at 2,448,280 to 2,449,440
_RS11025
Position (kb)
2447
2448
2449 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2446.491 kb on + strand, within ABZR86_RS11010 at 2446.492 kb on - strand, within ABZR86_RS11010 at 2446.492 kb on - strand, within ABZR86_RS11010 at 2446.492 kb on - strand, within ABZR86_RS11010 at 2446.654 kb on + strand at 2446.681 kb on + strand at 2446.681 kb on + strand at 2446.681 kb on + strand at 2446.682 kb on - strand at 2446.682 kb on - strand at 2446.682 kb on - strand at 2446.682 kb on - strand at 2446.784 kb on + strand, within ABZR86_RS11015 at 2446.784 kb on + strand, within ABZR86_RS11015 at 2446.784 kb on + strand, within ABZR86_RS11015 at 2446.785 kb on - strand, within ABZR86_RS11015 at 2446.785 kb on - strand, within ABZR86_RS11015 at 2446.819 kb on + strand, within ABZR86_RS11015 at 2446.927 kb on + strand, within ABZR86_RS11015 at 2446.927 kb on + strand, within ABZR86_RS11015 at 2446.927 kb on + strand, within ABZR86_RS11015 at 2446.928 kb on - strand, within ABZR86_RS11015 at 2446.928 kb on - strand, within ABZR86_RS11015 at 2446.928 kb on - strand, within ABZR86_RS11015 at 2447.089 kb on + strand, within ABZR86_RS11015 at 2447.089 kb on + strand, within ABZR86_RS11015 at 2447.090 kb on - strand, within ABZR86_RS11015 at 2447.090 kb on - strand, within ABZR86_RS11015 at 2447.090 kb on - strand, within ABZR86_RS11015 at 2447.090 kb on - strand, within ABZR86_RS11015 at 2447.251 kb on + strand at 2447.251 kb on + strand at 2447.252 kb on - strand at 2447.252 kb on - strand at 2447.252 kb on - strand at 2447.257 kb on + strand at 2447.257 kb on + strand at 2447.258 kb on - strand at 2447.392 kb on + strand at 2447.392 kb on + strand at 2447.392 kb on + strand at 2447.392 kb on + strand at 2447.392 kb on + strand at 2447.392 kb on + strand at 2447.392 kb on + strand at 2447.393 kb on - strand at 2447.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 2,446,491 + ABZR86_RS11010 0.79 -0.1 2,446,492 - ABZR86_RS11010 0.79 +0.2 2,446,492 - ABZR86_RS11010 0.79 +0.1 2,446,492 - ABZR86_RS11010 0.79 -0.4 2,446,654 + -1.9 2,446,681 + +0.3 2,446,681 + +0.1 2,446,681 + +0.2 2,446,682 - -0.5 2,446,682 - -0.0 2,446,682 - -0.1 2,446,682 - -1.3 2,446,784 + ABZR86_RS11015 0.27 -0.7 2,446,784 + ABZR86_RS11015 0.27 +0.6 2,446,784 + ABZR86_RS11015 0.27 +0.2 2,446,785 - ABZR86_RS11015 0.27 +0.2 2,446,785 - ABZR86_RS11015 0.27 -1.2 2,446,819 + ABZR86_RS11015 0.33 +0.4 2,446,927 + ABZR86_RS11015 0.54 -0.6 2,446,927 + ABZR86_RS11015 0.54 -0.5 2,446,927 + ABZR86_RS11015 0.54 -0.8 2,446,928 - ABZR86_RS11015 0.54 +0.3 2,446,928 - ABZR86_RS11015 0.54 +0.2 2,446,928 - ABZR86_RS11015 0.54 -0.2 2,447,089 + ABZR86_RS11015 0.86 +1.9 2,447,089 + ABZR86_RS11015 0.86 +0.7 2,447,090 - ABZR86_RS11015 0.86 -0.0 2,447,090 - ABZR86_RS11015 0.86 +0.3 2,447,090 - ABZR86_RS11015 0.86 -1.1 2,447,090 - ABZR86_RS11015 0.86 -0.2 2,447,251 + -0.0 2,447,251 + -0.3 2,447,252 - +1.0 2,447,252 - -0.1 2,447,252 - +0.8 2,447,257 + +0.2 2,447,257 + +0.1 2,447,258 - -0.1 2,447,392 + -0.3 2,447,392 + +1.0 2,447,392 + +1.4 2,447,392 + +0.5 2,447,392 + +1.4 2,447,392 + +1.0 2,447,392 + +1.5 2,447,393 - +1.0 2,447,393 - +1.4
Or see this region's nucleotide sequence