Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11020

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11010 and ABZR86_RS11015 are separated by 4 nucleotidesABZR86_RS11015 and ABZR86_RS11020 are separated by 228 nucleotidesABZR86_RS11020 and ABZR86_RS11025 are separated by 13 nucleotides ABZR86_RS11010: ABZR86_RS11010 - fimbria/pilus periplasmic chaperone, at 2,445,923 to 2,446,642 _RS11010 ABZR86_RS11015: ABZR86_RS11015 - spore coat U domain-containing protein, at 2,446,647 to 2,447,162 _RS11015 ABZR86_RS11020: ABZR86_RS11020 - succinate--CoA ligase subunit alpha, at 2,447,391 to 2,448,266 _RS11020 ABZR86_RS11025: ABZR86_RS11025 - ADP-forming succinate--CoA ligase subunit beta, at 2,448,280 to 2,449,440 _RS11025 Position (kb) 2447 2448 2449Strain fitness (log2 ratio) -2 -1 0 1 2at 2446.491 kb on + strand, within ABZR86_RS11010at 2446.492 kb on - strand, within ABZR86_RS11010at 2446.492 kb on - strand, within ABZR86_RS11010at 2446.492 kb on - strand, within ABZR86_RS11010at 2446.654 kb on + strandat 2446.681 kb on + strandat 2446.681 kb on + strandat 2446.681 kb on + strandat 2446.682 kb on - strandat 2446.682 kb on - strandat 2446.682 kb on - strandat 2446.682 kb on - strandat 2446.784 kb on + strand, within ABZR86_RS11015at 2446.784 kb on + strand, within ABZR86_RS11015at 2446.784 kb on + strand, within ABZR86_RS11015at 2446.785 kb on - strand, within ABZR86_RS11015at 2446.785 kb on - strand, within ABZR86_RS11015at 2446.819 kb on + strand, within ABZR86_RS11015at 2446.927 kb on + strand, within ABZR86_RS11015at 2446.927 kb on + strand, within ABZR86_RS11015at 2446.927 kb on + strand, within ABZR86_RS11015at 2446.928 kb on - strand, within ABZR86_RS11015at 2446.928 kb on - strand, within ABZR86_RS11015at 2446.928 kb on - strand, within ABZR86_RS11015at 2447.089 kb on + strand, within ABZR86_RS11015at 2447.089 kb on + strand, within ABZR86_RS11015at 2447.090 kb on - strand, within ABZR86_RS11015at 2447.090 kb on - strand, within ABZR86_RS11015at 2447.090 kb on - strand, within ABZR86_RS11015at 2447.090 kb on - strand, within ABZR86_RS11015at 2447.251 kb on + strandat 2447.251 kb on + strandat 2447.252 kb on - strandat 2447.252 kb on - strandat 2447.252 kb on - strandat 2447.257 kb on + strandat 2447.257 kb on + strandat 2447.258 kb on - strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.392 kb on + strandat 2447.393 kb on - strandat 2447.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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2,446,491 + ABZR86_RS11010 0.79 -0.1
2,446,492 - ABZR86_RS11010 0.79 +0.2
2,446,492 - ABZR86_RS11010 0.79 +0.1
2,446,492 - ABZR86_RS11010 0.79 -0.4
2,446,654 + -1.9
2,446,681 + +0.3
2,446,681 + +0.1
2,446,681 + +0.2
2,446,682 - -0.5
2,446,682 - -0.0
2,446,682 - -0.1
2,446,682 - -1.3
2,446,784 + ABZR86_RS11015 0.27 -0.7
2,446,784 + ABZR86_RS11015 0.27 +0.6
2,446,784 + ABZR86_RS11015 0.27 +0.2
2,446,785 - ABZR86_RS11015 0.27 +0.2
2,446,785 - ABZR86_RS11015 0.27 -1.2
2,446,819 + ABZR86_RS11015 0.33 +0.4
2,446,927 + ABZR86_RS11015 0.54 -0.6
2,446,927 + ABZR86_RS11015 0.54 -0.5
2,446,927 + ABZR86_RS11015 0.54 -0.8
2,446,928 - ABZR86_RS11015 0.54 +0.3
2,446,928 - ABZR86_RS11015 0.54 +0.2
2,446,928 - ABZR86_RS11015 0.54 -0.2
2,447,089 + ABZR86_RS11015 0.86 +1.9
2,447,089 + ABZR86_RS11015 0.86 +0.7
2,447,090 - ABZR86_RS11015 0.86 -0.0
2,447,090 - ABZR86_RS11015 0.86 +0.3
2,447,090 - ABZR86_RS11015 0.86 -1.1
2,447,090 - ABZR86_RS11015 0.86 -0.2
2,447,251 + -0.0
2,447,251 + -0.3
2,447,252 - +1.0
2,447,252 - -0.1
2,447,252 - +0.8
2,447,257 + +0.2
2,447,257 + +0.1
2,447,258 - -0.1
2,447,392 + -0.3
2,447,392 + +1.0
2,447,392 + +1.4
2,447,392 + +0.5
2,447,392 + +1.4
2,447,392 + +1.0
2,447,392 + +1.5
2,447,393 - +1.0
2,447,393 - +1.4

Or see this region's nucleotide sequence