Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS10830 and ABZR86_RS10835 are separated by 164 nucleotides ABZR86_RS10835 and ABZR86_RS10840 are separated by 4 nucleotides ABZR86_RS10840 and ABZR86_RS10845 overlap by 4 nucleotides
ABZR86_RS10830: ABZR86_RS10830 - Holliday junction branch migration DNA helicase RuvB, at 2,403,126 to 2,404,172
_RS10830
ABZR86_RS10835: ABZR86_RS10835 - potassium transporter Kup, at 2,404,337 to 2,406,238
_RS10835
ABZR86_RS10840: ABZR86_RS10840 - Holliday junction branch migration protein RuvA, at 2,406,243 to 2,406,836
_RS10840
ABZR86_RS10845: ABZR86_RS10845 - crossover junction endodeoxyribonuclease RuvC, at 2,406,833 to 2,407,351
_RS10845
Position (kb)
2404
2405
2406
2407 Strain fitness (log2 ratio)
-2
-1
0
1 at 2403.478 kb on + strand, within ABZR86_RS10830 at 2403.479 kb on - strand, within ABZR86_RS10830 at 2403.625 kb on + strand, within ABZR86_RS10830 at 2404.045 kb on + strand, within ABZR86_RS10830 at 2404.183 kb on + strand at 2404.183 kb on + strand at 2404.226 kb on - strand at 2404.234 kb on + strand at 2404.234 kb on + strand at 2404.234 kb on + strand at 2404.234 kb on + strand at 2404.235 kb on - strand at 2404.235 kb on - strand at 2404.235 kb on - strand at 2404.235 kb on - strand at 2404.235 kb on - strand at 2404.317 kb on + strand at 2404.317 kb on + strand at 2404.317 kb on + strand at 2404.318 kb on - strand at 2404.318 kb on - strand at 2404.318 kb on - strand at 2404.325 kb on - strand at 2404.609 kb on - strand, within ABZR86_RS10835 at 2406.154 kb on - strand at 2406.253 kb on - strand at 2406.686 kb on - strand, within ABZR86_RS10840 at 2406.730 kb on + strand, within ABZR86_RS10840 at 2406.731 kb on - strand, within ABZR86_RS10840 at 2406.731 kb on - strand, within ABZR86_RS10840 at 2406.761 kb on - strand, within ABZR86_RS10840 at 2406.963 kb on - strand, within ABZR86_RS10845
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 2,403,478 + ABZR86_RS10830 0.34 -1.7 2,403,479 - ABZR86_RS10830 0.34 -1.0 2,403,625 + ABZR86_RS10830 0.48 +0.4 2,404,045 + ABZR86_RS10830 0.88 -1.9 2,404,183 + -2.7 2,404,183 + -1.7 2,404,226 - -0.6 2,404,234 + +0.2 2,404,234 + -0.8 2,404,234 + -0.8 2,404,234 + +0.1 2,404,235 - +0.7 2,404,235 - -0.2 2,404,235 - -1.0 2,404,235 - -0.3 2,404,235 - -1.5 2,404,317 + +0.3 2,404,317 + -1.1 2,404,317 + -0.8 2,404,318 - -0.1 2,404,318 - +0.2 2,404,318 - +0.0 2,404,325 - +0.6 2,404,609 - ABZR86_RS10835 0.14 -0.9 2,406,154 - -0.7 2,406,253 - -1.6 2,406,686 - ABZR86_RS10840 0.75 -1.9 2,406,730 + ABZR86_RS10840 0.82 +0.6 2,406,731 - ABZR86_RS10840 0.82 -2.6 2,406,731 - ABZR86_RS10840 0.82 -0.9 2,406,761 - ABZR86_RS10840 0.87 -1.3 2,406,963 - ABZR86_RS10845 0.25 -1.9
Or see this region's nucleotide sequence