Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10835

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10830 and ABZR86_RS10835 are separated by 164 nucleotidesABZR86_RS10835 and ABZR86_RS10840 are separated by 4 nucleotidesABZR86_RS10840 and ABZR86_RS10845 overlap by 4 nucleotides ABZR86_RS10830: ABZR86_RS10830 - Holliday junction branch migration DNA helicase RuvB, at 2,403,126 to 2,404,172 _RS10830 ABZR86_RS10835: ABZR86_RS10835 - potassium transporter Kup, at 2,404,337 to 2,406,238 _RS10835 ABZR86_RS10840: ABZR86_RS10840 - Holliday junction branch migration protein RuvA, at 2,406,243 to 2,406,836 _RS10840 ABZR86_RS10845: ABZR86_RS10845 - crossover junction endodeoxyribonuclease RuvC, at 2,406,833 to 2,407,351 _RS10845 Position (kb) 2404 2405 2406 2407Strain fitness (log2 ratio) -2 -1 0 1at 2403.478 kb on + strand, within ABZR86_RS10830at 2403.479 kb on - strand, within ABZR86_RS10830at 2403.625 kb on + strand, within ABZR86_RS10830at 2404.045 kb on + strand, within ABZR86_RS10830at 2404.183 kb on + strandat 2404.183 kb on + strandat 2404.226 kb on - strandat 2404.234 kb on + strandat 2404.234 kb on + strandat 2404.234 kb on + strandat 2404.234 kb on + strandat 2404.235 kb on - strandat 2404.235 kb on - strandat 2404.235 kb on - strandat 2404.235 kb on - strandat 2404.235 kb on - strandat 2404.317 kb on + strandat 2404.317 kb on + strandat 2404.317 kb on + strandat 2404.318 kb on - strandat 2404.318 kb on - strandat 2404.318 kb on - strandat 2404.325 kb on - strandat 2404.609 kb on - strand, within ABZR86_RS10835at 2406.154 kb on - strandat 2406.253 kb on - strandat 2406.686 kb on - strand, within ABZR86_RS10840at 2406.730 kb on + strand, within ABZR86_RS10840at 2406.731 kb on - strand, within ABZR86_RS10840at 2406.731 kb on - strand, within ABZR86_RS10840at 2406.761 kb on - strand, within ABZR86_RS10840at 2406.963 kb on - strand, within ABZR86_RS10845

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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2,403,478 + ABZR86_RS10830 0.34 -1.7
2,403,479 - ABZR86_RS10830 0.34 -1.0
2,403,625 + ABZR86_RS10830 0.48 +0.4
2,404,045 + ABZR86_RS10830 0.88 -1.9
2,404,183 + -2.7
2,404,183 + -1.7
2,404,226 - -0.6
2,404,234 + +0.2
2,404,234 + -0.8
2,404,234 + -0.8
2,404,234 + +0.1
2,404,235 - +0.7
2,404,235 - -0.2
2,404,235 - -1.0
2,404,235 - -0.3
2,404,235 - -1.5
2,404,317 + +0.3
2,404,317 + -1.1
2,404,317 + -0.8
2,404,318 - -0.1
2,404,318 - +0.2
2,404,318 - +0.0
2,404,325 - +0.6
2,404,609 - ABZR86_RS10835 0.14 -0.9
2,406,154 - -0.7
2,406,253 - -1.6
2,406,686 - ABZR86_RS10840 0.75 -1.9
2,406,730 + ABZR86_RS10840 0.82 +0.6
2,406,731 - ABZR86_RS10840 0.82 -2.6
2,406,731 - ABZR86_RS10840 0.82 -0.9
2,406,761 - ABZR86_RS10840 0.87 -1.3
2,406,963 - ABZR86_RS10845 0.25 -1.9

Or see this region's nucleotide sequence