Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10795

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10785 and ABZR86_RS10790 are separated by 110 nucleotidesABZR86_RS10790 and ABZR86_RS10795 are separated by 10 nucleotidesABZR86_RS10795 and ABZR86_RS10800 are separated by 2 nucleotidesABZR86_RS10800 and ABZR86_RS10805 are separated by 244 nucleotides ABZR86_RS10785: ABZR86_RS10785 - 7-cyano-7-deazaguanine synthase QueC, at 2,396,114 to 2,396,809 _RS10785 ABZR86_RS10790: ABZR86_RS10790 - 7-carboxy-7-deazaguanine synthase QueE, at 2,396,920 to 2,397,612 _RS10790 ABZR86_RS10795: ABZR86_RS10795 - tol-pal system protein YbgF, at 2,397,623 to 2,398,513 _RS10795 ABZR86_RS10800: ABZR86_RS10800 - peptidoglycan-associated lipoprotein Pal, at 2,398,516 to 2,399,025 _RS10800 ABZR86_RS10805: ABZR86_RS10805 - Tol-Pal system beta propeller repeat protein TolB, at 2,399,270 to 2,400,589 _RS10805 Position (kb) 2397 2398 2399Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2397.104 kb on + strand, within ABZR86_RS10790at 2397.434 kb on + strand, within ABZR86_RS10790at 2397.435 kb on - strand, within ABZR86_RS10790at 2397.693 kb on + strandat 2397.693 kb on + strandat 2397.693 kb on + strandat 2397.693 kb on + strandat 2397.694 kb on - strandat 2397.846 kb on + strand, within ABZR86_RS10795at 2397.847 kb on - strand, within ABZR86_RS10795at 2397.861 kb on + strand, within ABZR86_RS10795at 2397.861 kb on + strand, within ABZR86_RS10795at 2397.861 kb on + strand, within ABZR86_RS10795at 2397.861 kb on + strand, within ABZR86_RS10795at 2397.861 kb on + strand, within ABZR86_RS10795at 2397.861 kb on + strand, within ABZR86_RS10795at 2397.862 kb on - strand, within ABZR86_RS10795at 2397.862 kb on - strand, within ABZR86_RS10795at 2397.862 kb on - strand, within ABZR86_RS10795at 2397.862 kb on - strand, within ABZR86_RS10795at 2397.862 kb on - strand, within ABZR86_RS10795at 2397.862 kb on - strand, within ABZR86_RS10795at 2397.864 kb on + strand, within ABZR86_RS10795at 2397.864 kb on + strand, within ABZR86_RS10795at 2397.864 kb on + strand, within ABZR86_RS10795at 2397.864 kb on + strand, within ABZR86_RS10795at 2397.864 kb on + strand, within ABZR86_RS10795at 2397.865 kb on - strand, within ABZR86_RS10795at 2397.865 kb on - strand, within ABZR86_RS10795at 2397.882 kb on + strand, within ABZR86_RS10795at 2397.882 kb on + strand, within ABZR86_RS10795at 2397.882 kb on + strand, within ABZR86_RS10795at 2397.883 kb on - strand, within ABZR86_RS10795at 2397.885 kb on + strand, within ABZR86_RS10795at 2397.885 kb on + strand, within ABZR86_RS10795at 2397.885 kb on + strand, within ABZR86_RS10795at 2397.886 kb on - strand, within ABZR86_RS10795at 2397.886 kb on - strand, within ABZR86_RS10795at 2397.886 kb on - strand, within ABZR86_RS10795at 2397.957 kb on + strand, within ABZR86_RS10795at 2397.957 kb on + strand, within ABZR86_RS10795at 2397.957 kb on + strand, within ABZR86_RS10795at 2397.958 kb on - strand, within ABZR86_RS10795at 2397.958 kb on - strand, within ABZR86_RS10795at 2397.993 kb on + strand, within ABZR86_RS10795at 2397.993 kb on + strand, within ABZR86_RS10795at 2397.994 kb on - strand, within ABZR86_RS10795at 2397.994 kb on - strand, within ABZR86_RS10795at 2397.994 kb on - strand, within ABZR86_RS10795at 2398.233 kb on + strand, within ABZR86_RS10795at 2398.233 kb on + strand, within ABZR86_RS10795at 2398.478 kb on + strandat 2398.478 kb on + strandat 2398.479 kb on - strandat 2398.517 kb on + strandat 2398.517 kb on + strandat 2398.517 kb on + strandat 2398.517 kb on + strandat 2398.517 kb on + strandat 2398.518 kb on - strandat 2398.518 kb on - strandat 2399.128 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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2,397,104 + ABZR86_RS10790 0.27 -4.7
2,397,434 + ABZR86_RS10790 0.74 -2.7
2,397,435 - ABZR86_RS10790 0.74 -0.5
2,397,693 + -3.2
2,397,693 + -1.8
2,397,693 + -0.2
2,397,693 + -3.4
2,397,694 - -0.9
2,397,846 + ABZR86_RS10795 0.25 -0.2
2,397,847 - ABZR86_RS10795 0.25 -0.0
2,397,861 + ABZR86_RS10795 0.27 -0.8
2,397,861 + ABZR86_RS10795 0.27 -1.1
2,397,861 + ABZR86_RS10795 0.27 -0.7
2,397,861 + ABZR86_RS10795 0.27 -1.9
2,397,861 + ABZR86_RS10795 0.27 -0.1
2,397,861 + ABZR86_RS10795 0.27 -2.1
2,397,862 - ABZR86_RS10795 0.27 -2.1
2,397,862 - ABZR86_RS10795 0.27 -1.0
2,397,862 - ABZR86_RS10795 0.27 +0.4
2,397,862 - ABZR86_RS10795 0.27 -1.9
2,397,862 - ABZR86_RS10795 0.27 -3.6
2,397,862 - ABZR86_RS10795 0.27 -1.8
2,397,864 + ABZR86_RS10795 0.27 -0.5
2,397,864 + ABZR86_RS10795 0.27 -1.1
2,397,864 + ABZR86_RS10795 0.27 -0.4
2,397,864 + ABZR86_RS10795 0.27 -2.2
2,397,864 + ABZR86_RS10795 0.27 -1.1
2,397,865 - ABZR86_RS10795 0.27 -0.6
2,397,865 - ABZR86_RS10795 0.27 -1.0
2,397,882 + ABZR86_RS10795 0.29 -1.2
2,397,882 + ABZR86_RS10795 0.29 -1.4
2,397,882 + ABZR86_RS10795 0.29 -3.2
2,397,883 - ABZR86_RS10795 0.29 +0.7
2,397,885 + ABZR86_RS10795 0.29 -0.2
2,397,885 + ABZR86_RS10795 0.29 -2.1
2,397,885 + ABZR86_RS10795 0.29 -0.8
2,397,886 - ABZR86_RS10795 0.30 -1.0
2,397,886 - ABZR86_RS10795 0.30 -0.2
2,397,886 - ABZR86_RS10795 0.30 -3.0
2,397,957 + ABZR86_RS10795 0.37 -2.1
2,397,957 + ABZR86_RS10795 0.37 -1.1
2,397,957 + ABZR86_RS10795 0.37 -0.9
2,397,958 - ABZR86_RS10795 0.38 -1.0
2,397,958 - ABZR86_RS10795 0.38 -0.2
2,397,993 + ABZR86_RS10795 0.42 -1.3
2,397,993 + ABZR86_RS10795 0.42 -0.8
2,397,994 - ABZR86_RS10795 0.42 -2.9
2,397,994 - ABZR86_RS10795 0.42 -1.3
2,397,994 - ABZR86_RS10795 0.42 -0.6
2,398,233 + ABZR86_RS10795 0.68 -0.7
2,398,233 + ABZR86_RS10795 0.68 -2.5
2,398,478 + -2.4
2,398,478 + -2.7
2,398,479 - -0.9
2,398,517 + -1.1
2,398,517 + -1.4
2,398,517 + -2.9
2,398,517 + -3.2
2,398,517 + -1.6
2,398,518 - +0.2
2,398,518 - -3.2
2,399,128 + -1.0

Or see this region's nucleotide sequence