Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10515

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10505 and ABZR86_RS10510 are separated by 4 nucleotidesABZR86_RS10510 and ABZR86_RS10515 overlap by 4 nucleotidesABZR86_RS10515 and ABZR86_RS10520 are separated by 116 nucleotidesABZR86_RS10520 and ABZR86_RS10525 are separated by 273 nucleotides ABZR86_RS10505: ABZR86_RS10505 - ribosomal protein S18-alanine N-acetyltransferase, at 2,336,340 to 2,336,810 _RS10505 ABZR86_RS10510: ABZR86_RS10510 - hypothetical protein, at 2,336,815 to 2,337,300 _RS10510 ABZR86_RS10515: ABZR86_RS10515 - phosphatidylcholine/phosphatidylserine synthase, at 2,337,297 to 2,338,070 _RS10515 ABZR86_RS10520: ABZR86_RS10520 - DUF4124 domain-containing protein, at 2,338,187 to 2,338,639 _RS10520 ABZR86_RS10525: ABZR86_RS10525 - proline--tRNA ligase, at 2,338,913 to 2,340,610 _RS10525 Position (kb) 2337 2338 2339Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2336.405 kb on - strand, within ABZR86_RS10505at 2336.405 kb on - strand, within ABZR86_RS10505at 2336.405 kb on - strand, within ABZR86_RS10505at 2336.405 kb on - strand, within ABZR86_RS10505at 2336.447 kb on - strand, within ABZR86_RS10505at 2338.101 kb on + strandat 2338.101 kb on + strandat 2338.121 kb on - strandat 2338.121 kb on - strandat 2338.135 kb on + strandat 2338.135 kb on + strandat 2338.136 kb on - strandat 2338.136 kb on - strandat 2338.136 kb on - strandat 2338.136 kb on - strandat 2338.167 kb on + strandat 2338.167 kb on + strandat 2338.167 kb on + strandat 2338.167 kb on + strandat 2338.168 kb on - strandat 2338.168 kb on - strandat 2338.168 kb on - strandat 2338.266 kb on - strand, within ABZR86_RS10520at 2338.298 kb on + strand, within ABZR86_RS10520at 2338.613 kb on + strandat 2338.613 kb on + strandat 2338.613 kb on + strandat 2338.613 kb on + strandat 2338.613 kb on + strandat 2338.614 kb on - strandat 2338.622 kb on + strandat 2338.623 kb on - strandat 2338.623 kb on - strandat 2338.637 kb on + strandat 2338.638 kb on - strandat 2338.638 kb on - strandat 2338.691 kb on + strandat 2338.841 kb on - strandat 2338.876 kb on - strandat 2338.876 kb on - strandat 2338.876 kb on - strandat 2338.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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2,336,405 - ABZR86_RS10505 0.14 -2.2
2,336,405 - ABZR86_RS10505 0.14 -0.4
2,336,405 - ABZR86_RS10505 0.14 -0.7
2,336,405 - ABZR86_RS10505 0.14 -3.3
2,336,447 - ABZR86_RS10505 0.23 -0.5
2,338,101 + +0.8
2,338,101 + +0.6
2,338,121 - +1.3
2,338,121 - +1.9
2,338,135 + +1.0
2,338,135 + -0.6
2,338,136 - +1.4
2,338,136 - +1.8
2,338,136 - +1.0
2,338,136 - +1.5
2,338,167 + -0.2
2,338,167 + -0.6
2,338,167 + -0.4
2,338,167 + +0.8
2,338,168 - +0.9
2,338,168 - +0.7
2,338,168 - +0.6
2,338,266 - ABZR86_RS10520 0.17 -1.7
2,338,298 + ABZR86_RS10520 0.25 +0.2
2,338,613 + +0.7
2,338,613 + -1.2
2,338,613 + -1.5
2,338,613 + +0.2
2,338,613 + +0.5
2,338,614 - -0.1
2,338,622 + -0.0
2,338,623 - -0.5
2,338,623 - +1.0
2,338,637 + +0.2
2,338,638 - +0.1
2,338,638 - -0.2
2,338,691 + +0.4
2,338,841 - -0.6
2,338,876 - -0.9
2,338,876 - +0.5
2,338,876 - -0.9
2,338,877 + -0.1

Or see this region's nucleotide sequence