Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08905

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08900 and ABZR86_RS08905 are separated by 12 nucleotidesABZR86_RS08905 and ABZR86_RS08910 overlap by 4 nucleotidesABZR86_RS08910 and ABZR86_RS08915 are separated by 229 nucleotides ABZR86_RS08900: ABZR86_RS08900 - aldehyde dehydrogenase, at 1,986,118 to 1,987,569 _RS08900 ABZR86_RS08905: ABZR86_RS08905 - carbonate dehydratase, at 1,987,582 to 1,988,250 _RS08905 ABZR86_RS08910: ABZR86_RS08910 - RidA family protein, at 1,988,247 to 1,988,672 _RS08910 ABZR86_RS08915: ABZR86_RS08915 - hypothetical protein, at 1,988,902 to 1,989,123 _RS08915 Position (kb) 1987 1988 1989Strain fitness (log2 ratio) -1 0 1at 1986.583 kb on + strand, within ABZR86_RS08900at 1986.583 kb on + strand, within ABZR86_RS08900at 1987.009 kb on + strand, within ABZR86_RS08900at 1987.010 kb on - strand, within ABZR86_RS08900at 1987.010 kb on - strand, within ABZR86_RS08900at 1987.030 kb on + strand, within ABZR86_RS08900at 1987.031 kb on - strand, within ABZR86_RS08900at 1987.101 kb on - strand, within ABZR86_RS08900at 1987.219 kb on + strand, within ABZR86_RS08900at 1987.219 kb on + strand, within ABZR86_RS08900at 1987.220 kb on - strand, within ABZR86_RS08900at 1987.355 kb on - strand, within ABZR86_RS08900at 1987.374 kb on - strand, within ABZR86_RS08900at 1987.565 kb on - strandat 1987.567 kb on + strandat 1987.568 kb on - strandat 1987.693 kb on + strand, within ABZR86_RS08905at 1987.693 kb on + strand, within ABZR86_RS08905at 1987.693 kb on + strand, within ABZR86_RS08905at 1987.693 kb on + strand, within ABZR86_RS08905at 1987.693 kb on + strand, within ABZR86_RS08905at 1987.693 kb on + strand, within ABZR86_RS08905at 1987.694 kb on - strand, within ABZR86_RS08905at 1987.844 kb on + strand, within ABZR86_RS08905at 1987.844 kb on + strand, within ABZR86_RS08905at 1987.844 kb on + strand, within ABZR86_RS08905at 1987.844 kb on + strand, within ABZR86_RS08905at 1987.845 kb on - strand, within ABZR86_RS08905at 1987.845 kb on - strand, within ABZR86_RS08905at 1987.845 kb on - strand, within ABZR86_RS08905at 1987.845 kb on - strand, within ABZR86_RS08905at 1988.016 kb on + strand, within ABZR86_RS08905at 1988.129 kb on - strand, within ABZR86_RS08905at 1988.129 kb on - strand, within ABZR86_RS08905at 1988.129 kb on - strand, within ABZR86_RS08905at 1988.129 kb on - strand, within ABZR86_RS08905at 1988.129 kb on - strand, within ABZR86_RS08905at 1988.191 kb on + strandat 1988.200 kb on + strandat 1988.201 kb on - strandat 1988.201 kb on - strandat 1988.412 kb on + strand, within ABZR86_RS08910at 1988.412 kb on + strand, within ABZR86_RS08910at 1988.412 kb on + strand, within ABZR86_RS08910at 1988.413 kb on - strand, within ABZR86_RS08910at 1988.440 kb on + strand, within ABZR86_RS08910at 1988.440 kb on + strand, within ABZR86_RS08910at 1988.441 kb on - strand, within ABZR86_RS08910at 1988.545 kb on - strand, within ABZR86_RS08910at 1988.545 kb on - strand, within ABZR86_RS08910at 1988.545 kb on - strand, within ABZR86_RS08910at 1988.683 kb on + strandat 1988.683 kb on + strandat 1988.684 kb on - strandat 1989.021 kb on + strand, within ABZR86_RS08915at 1989.117 kb on + strandat 1989.117 kb on + strandat 1989.117 kb on + strandat 1989.118 kb on - strandat 1989.118 kb on - strandat 1989.136 kb on + strandat 1989.136 kb on + strandat 1989.137 kb on - strandat 1989.137 kb on - strandat 1989.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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1,986,583 + ABZR86_RS08900 0.32 -0.7
1,986,583 + ABZR86_RS08900 0.32 +0.1
1,987,009 + ABZR86_RS08900 0.61 +0.2
1,987,010 - ABZR86_RS08900 0.61 +0.5
1,987,010 - ABZR86_RS08900 0.61 +0.3
1,987,030 + ABZR86_RS08900 0.63 -0.1
1,987,031 - ABZR86_RS08900 0.63 +0.0
1,987,101 - ABZR86_RS08900 0.68 +0.5
1,987,219 + ABZR86_RS08900 0.76 -0.0
1,987,219 + ABZR86_RS08900 0.76 -0.1
1,987,220 - ABZR86_RS08900 0.76 +0.4
1,987,355 - ABZR86_RS08900 0.85 +1.0
1,987,374 - ABZR86_RS08900 0.87 -0.6
1,987,565 - +0.0
1,987,567 + +0.8
1,987,568 - +0.2
1,987,693 + ABZR86_RS08905 0.17 -0.3
1,987,693 + ABZR86_RS08905 0.17 -1.2
1,987,693 + ABZR86_RS08905 0.17 +1.0
1,987,693 + ABZR86_RS08905 0.17 +0.3
1,987,693 + ABZR86_RS08905 0.17 -0.1
1,987,693 + ABZR86_RS08905 0.17 -0.5
1,987,694 - ABZR86_RS08905 0.17 +0.4
1,987,844 + ABZR86_RS08905 0.39 -0.7
1,987,844 + ABZR86_RS08905 0.39 -0.7
1,987,844 + ABZR86_RS08905 0.39 +0.1
1,987,844 + ABZR86_RS08905 0.39 -0.9
1,987,845 - ABZR86_RS08905 0.39 -1.2
1,987,845 - ABZR86_RS08905 0.39 -0.9
1,987,845 - ABZR86_RS08905 0.39 +0.1
1,987,845 - ABZR86_RS08905 0.39 -0.5
1,988,016 + ABZR86_RS08905 0.65 +0.1
1,988,129 - ABZR86_RS08905 0.82 -0.1
1,988,129 - ABZR86_RS08905 0.82 -0.9
1,988,129 - ABZR86_RS08905 0.82 -0.3
1,988,129 - ABZR86_RS08905 0.82 +0.3
1,988,129 - ABZR86_RS08905 0.82 +1.1
1,988,191 + -0.6
1,988,200 + -0.4
1,988,201 - -0.5
1,988,201 - -0.9
1,988,412 + ABZR86_RS08910 0.39 +0.3
1,988,412 + ABZR86_RS08910 0.39 +1.0
1,988,412 + ABZR86_RS08910 0.39 +0.0
1,988,413 - ABZR86_RS08910 0.39 +0.1
1,988,440 + ABZR86_RS08910 0.45 -0.1
1,988,440 + ABZR86_RS08910 0.45 -0.5
1,988,441 - ABZR86_RS08910 0.46 -0.2
1,988,545 - ABZR86_RS08910 0.70 -0.1
1,988,545 - ABZR86_RS08910 0.70 +0.1
1,988,545 - ABZR86_RS08910 0.70 +0.2
1,988,683 + +0.9
1,988,683 + +0.1
1,988,684 - +0.1
1,989,021 + ABZR86_RS08915 0.54 -0.0
1,989,117 + -0.1
1,989,117 + -0.5
1,989,117 + -0.5
1,989,118 - +0.2
1,989,118 - -0.8
1,989,136 + +0.1
1,989,136 + -0.5
1,989,137 - -0.7
1,989,137 - +0.2
1,989,197 - +0.7

Or see this region's nucleotide sequence