Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS07875 and ABZR86_RS07880 are separated by 127 nucleotides ABZR86_RS07880 and ABZR86_RS07885 are separated by 103 nucleotides ABZR86_RS07885 and ABZR86_RS07890 are separated by 49 nucleotides ABZR86_RS07890 and ABZR86_RS07895 are separated by 124 nucleotides
ABZR86_RS07875: ABZR86_RS07875 - hypothetical protein, at 1,751,085 to 1,752,386
_RS07875
ABZR86_RS07880: ABZR86_RS07880 - 30S ribosomal protein THX, at 1,752,514 to 1,752,678
_RS07880
ABZR86_RS07885: ABZR86_RS07885 - cation diffusion facilitator family transporter, at 1,752,782 to 1,753,765
_RS07885
ABZR86_RS07890: ABZR86_RS07890 - MerC domain-containing protein, at 1,753,815 to 1,754,237
_RS07890
ABZR86_RS07895: ABZR86_RS07895 - TonB-dependent receptor, at 1,754,362 to 1,756,362
_RS07895
Position (kb)
1752
1753
1754 Strain fitness (log2 ratio)
-2
-1
0
1 at 1751.788 kb on - strand, within ABZR86_RS07875 at 1752.075 kb on + strand, within ABZR86_RS07875 at 1752.208 kb on - strand, within ABZR86_RS07875 at 1752.208 kb on - strand, within ABZR86_RS07875 at 1752.208 kb on - strand, within ABZR86_RS07875 at 1752.427 kb on - strand at 1752.626 kb on + strand, within ABZR86_RS07880 at 1752.626 kb on + strand, within ABZR86_RS07880 at 1752.626 kb on + strand, within ABZR86_RS07880 at 1752.627 kb on - strand, within ABZR86_RS07880 at 1752.638 kb on + strand, within ABZR86_RS07880 at 1752.638 kb on + strand, within ABZR86_RS07880 at 1752.690 kb on + strand at 1752.691 kb on - strand at 1752.697 kb on + strand at 1752.710 kb on + strand at 1752.711 kb on - strand at 1752.732 kb on + strand at 1753.232 kb on + strand, within ABZR86_RS07885 at 1753.233 kb on - strand, within ABZR86_RS07885 at 1753.233 kb on - strand, within ABZR86_RS07885 at 1753.467 kb on + strand, within ABZR86_RS07885 at 1753.467 kb on + strand, within ABZR86_RS07885 at 1753.467 kb on + strand, within ABZR86_RS07885 at 1753.467 kb on + strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.468 kb on - strand, within ABZR86_RS07885 at 1753.776 kb on + strand at 1753.777 kb on - strand at 1753.777 kb on - strand at 1753.777 kb on - strand at 1753.940 kb on - strand, within ABZR86_RS07890 at 1754.250 kb on - strand at 1754.340 kb on + strand at 1754.341 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 1,751,788 - ABZR86_RS07875 0.54 -0.3 1,752,075 + ABZR86_RS07875 0.76 -0.3 1,752,208 - ABZR86_RS07875 0.86 -0.9 1,752,208 - ABZR86_RS07875 0.86 -1.8 1,752,208 - ABZR86_RS07875 0.86 +0.4 1,752,427 - +0.4 1,752,626 + ABZR86_RS07880 0.68 +0.7 1,752,626 + ABZR86_RS07880 0.68 -1.1 1,752,626 + ABZR86_RS07880 0.68 -0.3 1,752,627 - ABZR86_RS07880 0.68 +0.1 1,752,638 + ABZR86_RS07880 0.75 -0.3 1,752,638 + ABZR86_RS07880 0.75 -0.3 1,752,690 + +0.0 1,752,691 - -0.3 1,752,697 + -0.0 1,752,710 + -0.3 1,752,711 - +0.2 1,752,732 + -0.1 1,753,232 + ABZR86_RS07885 0.46 -0.3 1,753,233 - ABZR86_RS07885 0.46 +1.4 1,753,233 - ABZR86_RS07885 0.46 +0.6 1,753,467 + ABZR86_RS07885 0.70 +0.0 1,753,467 + ABZR86_RS07885 0.70 +0.3 1,753,467 + ABZR86_RS07885 0.70 +0.3 1,753,467 + ABZR86_RS07885 0.70 +0.9 1,753,468 - ABZR86_RS07885 0.70 +0.6 1,753,468 - ABZR86_RS07885 0.70 -0.8 1,753,468 - ABZR86_RS07885 0.70 -1.8 1,753,468 - ABZR86_RS07885 0.70 -1.2 1,753,468 - ABZR86_RS07885 0.70 +0.2 1,753,468 - ABZR86_RS07885 0.70 -0.4 1,753,468 - ABZR86_RS07885 0.70 -1.0 1,753,776 + -0.9 1,753,777 - -0.8 1,753,777 - +0.1 1,753,777 - -0.4 1,753,940 - ABZR86_RS07890 0.30 +0.1 1,754,250 - -0.1 1,754,340 + -0.3 1,754,341 - +0.5
Or see this region's nucleotide sequence