Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04795 and ABZR86_RS04800 are separated by 211 nucleotides ABZR86_RS04800 and ABZR86_RS04805 are separated by 7 nucleotides ABZR86_RS04805 and ABZR86_RS04810 are separated by 75 nucleotides
ABZR86_RS04795: ABZR86_RS04795 - S8 family serine peptidase, at 1,071,590 to 1,072,861
_RS04795
ABZR86_RS04800: ABZR86_RS04800 - carbonic anhydrase, at 1,073,073 to 1,073,825
_RS04800
ABZR86_RS04805: ABZR86_RS04805 - hypothetical protein, at 1,073,833 to 1,074,402
_RS04805
ABZR86_RS04810: ABZR86_RS04810 - autotransporter outer membrane beta-barrel domain-containing protein, at 1,074,478 to 1,077,795
_RS04810
Position (kb)
1073
1074 Strain fitness (log2 ratio)
-1
0
1 at 1072.317 kb on - strand, within ABZR86_RS04795 at 1072.317 kb on - strand, within ABZR86_RS04795 at 1072.800 kb on + strand at 1072.801 kb on - strand at 1072.950 kb on + strand at 1072.950 kb on + strand at 1072.956 kb on + strand at 1072.957 kb on - strand at 1073.492 kb on - strand, within ABZR86_RS04800 at 1073.492 kb on - strand, within ABZR86_RS04800 at 1073.492 kb on - strand, within ABZR86_RS04800 at 1073.607 kb on + strand, within ABZR86_RS04800 at 1073.608 kb on - strand, within ABZR86_RS04800 at 1073.608 kb on - strand, within ABZR86_RS04800 at 1073.608 kb on - strand, within ABZR86_RS04800 at 1073.679 kb on + strand, within ABZR86_RS04800 at 1073.679 kb on + strand, within ABZR86_RS04800 at 1073.680 kb on - strand, within ABZR86_RS04800 at 1073.855 kb on + strand at 1073.855 kb on + strand at 1073.855 kb on + strand at 1073.855 kb on + strand at 1073.856 kb on - strand at 1073.856 kb on - strand at 1074.011 kb on + strand, within ABZR86_RS04805 at 1074.012 kb on - strand, within ABZR86_RS04805 at 1074.012 kb on - strand, within ABZR86_RS04805 at 1074.318 kb on - strand, within ABZR86_RS04805 at 1074.369 kb on - strand at 1074.561 kb on - strand at 1074.696 kb on + strand at 1074.696 kb on + strand at 1074.696 kb on + strand at 1074.696 kb on + strand at 1074.696 kb on + strand at 1074.697 kb on - strand at 1074.697 kb on - strand at 1074.720 kb on - strand at 1074.720 kb on - strand at 1074.720 kb on - strand at 1074.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 1,072,317 - ABZR86_RS04795 0.57 -0.2 1,072,317 - ABZR86_RS04795 0.57 +0.3 1,072,800 + -0.7 1,072,801 - +0.6 1,072,950 + -0.2 1,072,950 + +0.6 1,072,956 + +0.4 1,072,957 - +0.1 1,073,492 - ABZR86_RS04800 0.56 +0.1 1,073,492 - ABZR86_RS04800 0.56 +0.0 1,073,492 - ABZR86_RS04800 0.56 +0.1 1,073,607 + ABZR86_RS04800 0.71 -0.2 1,073,608 - ABZR86_RS04800 0.71 +1.4 1,073,608 - ABZR86_RS04800 0.71 +0.2 1,073,608 - ABZR86_RS04800 0.71 +0.6 1,073,679 + ABZR86_RS04800 0.80 +0.9 1,073,679 + ABZR86_RS04800 0.80 -0.8 1,073,680 - ABZR86_RS04800 0.81 +0.7 1,073,855 + +0.1 1,073,855 + -0.1 1,073,855 + -0.1 1,073,855 + +0.1 1,073,856 - -0.0 1,073,856 - -1.4 1,074,011 + ABZR86_RS04805 0.31 +1.6 1,074,012 - ABZR86_RS04805 0.31 -0.2 1,074,012 - ABZR86_RS04805 0.31 -0.3 1,074,318 - ABZR86_RS04805 0.85 +0.7 1,074,369 - +0.1 1,074,561 - +0.7 1,074,696 + +0.6 1,074,696 + +0.6 1,074,696 + +0.5 1,074,696 + -0.1 1,074,696 + +0.2 1,074,697 - +0.4 1,074,697 - -0.2 1,074,720 - +0.5 1,074,720 - -0.2 1,074,720 - +0.9 1,074,720 - -0.2
Or see this region's nucleotide sequence