Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03960

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03955 and ABZR86_RS03960 overlap by 4 nucleotidesABZR86_RS03960 and ABZR86_RS03965 are separated by 185 nucleotides ABZR86_RS03955: ABZR86_RS03955 - DEAD/DEAH box helicase, at 865,920 to 868,328 _RS03955 ABZR86_RS03960: ABZR86_RS03960 - ribonuclease H-like domain-containing protein, at 868,325 to 869,149 _RS03960 ABZR86_RS03965: ABZR86_RS03965 - sterol desaturase family protein, at 869,335 to 870,351 _RS03965 Position (kb) 868 869 870Strain fitness (log2 ratio) -1 0 1at 867.420 kb on + strand, within ABZR86_RS03955at 867.519 kb on + strand, within ABZR86_RS03955at 867.543 kb on + strand, within ABZR86_RS03955at 867.544 kb on - strand, within ABZR86_RS03955at 867.579 kb on + strand, within ABZR86_RS03955at 867.618 kb on + strand, within ABZR86_RS03955at 867.618 kb on + strand, within ABZR86_RS03955at 867.618 kb on + strand, within ABZR86_RS03955at 867.618 kb on + strand, within ABZR86_RS03955at 867.619 kb on - strand, within ABZR86_RS03955at 867.642 kb on + strand, within ABZR86_RS03955at 867.643 kb on - strand, within ABZR86_RS03955at 867.643 kb on - strand, within ABZR86_RS03955at 867.645 kb on + strand, within ABZR86_RS03955at 867.646 kb on - strand, within ABZR86_RS03955at 867.646 kb on - strand, within ABZR86_RS03955at 867.646 kb on - strand, within ABZR86_RS03955at 867.646 kb on - strand, within ABZR86_RS03955at 867.663 kb on + strand, within ABZR86_RS03955at 867.663 kb on + strand, within ABZR86_RS03955at 867.664 kb on - strand, within ABZR86_RS03955at 867.664 kb on - strand, within ABZR86_RS03955at 867.780 kb on + strand, within ABZR86_RS03955at 867.781 kb on - strand, within ABZR86_RS03955at 867.941 kb on + strand, within ABZR86_RS03955at 867.941 kb on + strand, within ABZR86_RS03955at 867.942 kb on - strand, within ABZR86_RS03955at 868.110 kb on + strandat 868.110 kb on + strandat 868.111 kb on - strandat 868.111 kb on - strandat 868.111 kb on - strandat 868.111 kb on - strandat 868.116 kb on + strandat 868.117 kb on - strandat 868.325 kb on - strandat 868.325 kb on - strandat 868.325 kb on - strandat 868.325 kb on - strandat 868.372 kb on + strandat 868.372 kb on + strandat 868.373 kb on - strandat 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.897 kb on + strand, within ABZR86_RS03960at 868.897 kb on + strand, within ABZR86_RS03960at 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.148 kb on - strandat 869.229 kb on + strandat 869.229 kb on + strandat 869.229 kb on + strandat 869.299 kb on + strandat 869.536 kb on + strand, within ABZR86_RS03965at 869.589 kb on + strand, within ABZR86_RS03965at 869.589 kb on + strand, within ABZR86_RS03965at 869.590 kb on - strand, within ABZR86_RS03965at 869.590 kb on - strand, within ABZR86_RS03965at 869.675 kb on - strand, within ABZR86_RS03965at 869.680 kb on + strand, within ABZR86_RS03965at 869.710 kb on + strand, within ABZR86_RS03965at 869.711 kb on - strand, within ABZR86_RS03965at 869.797 kb on + strand, within ABZR86_RS03965at 869.797 kb on + strand, within ABZR86_RS03965at 869.797 kb on + strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.824 kb on + strand, within ABZR86_RS03965at 869.825 kb on - strand, within ABZR86_RS03965at 870.028 kb on + strand, within ABZR86_RS03965at 870.028 kb on + strand, within ABZR86_RS03965at 870.029 kb on - strand, within ABZR86_RS03965at 870.029 kb on - strand, within ABZR86_RS03965at 870.085 kb on + strand, within ABZR86_RS03965at 870.085 kb on + strand, within ABZR86_RS03965at 870.085 kb on + strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.107 kb on + strand, within ABZR86_RS03965at 870.107 kb on + strand, within ABZR86_RS03965at 870.119 kb on - strand, within ABZR86_RS03965

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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867,420 + ABZR86_RS03955 0.62 -0.5
867,519 + ABZR86_RS03955 0.66 +0.0
867,543 + ABZR86_RS03955 0.67 +0.8
867,544 - ABZR86_RS03955 0.67 +1.1
867,579 + ABZR86_RS03955 0.69 -0.0
867,618 + ABZR86_RS03955 0.70 +1.3
867,618 + ABZR86_RS03955 0.70 -0.5
867,618 + ABZR86_RS03955 0.70 +0.0
867,618 + ABZR86_RS03955 0.70 -0.1
867,619 - ABZR86_RS03955 0.71 -0.5
867,642 + ABZR86_RS03955 0.71 +0.4
867,643 - ABZR86_RS03955 0.72 +1.3
867,643 - ABZR86_RS03955 0.72 -0.2
867,645 + ABZR86_RS03955 0.72 -1.2
867,646 - ABZR86_RS03955 0.72 -0.0
867,646 - ABZR86_RS03955 0.72 +0.0
867,646 - ABZR86_RS03955 0.72 -0.3
867,646 - ABZR86_RS03955 0.72 -0.2
867,663 + ABZR86_RS03955 0.72 +0.4
867,663 + ABZR86_RS03955 0.72 +1.2
867,664 - ABZR86_RS03955 0.72 -0.4
867,664 - ABZR86_RS03955 0.72 -0.4
867,780 + ABZR86_RS03955 0.77 -0.1
867,781 - ABZR86_RS03955 0.77 -0.4
867,941 + ABZR86_RS03955 0.84 +0.2
867,941 + ABZR86_RS03955 0.84 -0.8
867,942 - ABZR86_RS03955 0.84 -0.1
868,110 + +0.1
868,110 + -0.5
868,111 - -0.0
868,111 - -0.0
868,111 - -0.7
868,111 - +0.1
868,116 + -0.1
868,117 - -0.1
868,325 - +0.5
868,325 - -0.3
868,325 - +0.1
868,325 - -0.1
868,372 + +0.4
868,372 + -0.4
868,373 - -1.2
868,811 + ABZR86_RS03960 0.59 -0.5
868,811 + ABZR86_RS03960 0.59 -0.5
868,811 + ABZR86_RS03960 0.59 +0.1
868,811 + ABZR86_RS03960 0.59 -0.7
868,811 + ABZR86_RS03960 0.59 -0.4
868,812 - ABZR86_RS03960 0.59 +0.2
868,812 - ABZR86_RS03960 0.59 -0.2
868,812 - ABZR86_RS03960 0.59 +0.7
868,826 + ABZR86_RS03960 0.61 +0.1
868,826 + ABZR86_RS03960 0.61 -0.3
868,826 + ABZR86_RS03960 0.61 -0.3
868,827 - ABZR86_RS03960 0.61 +0.6
868,827 - ABZR86_RS03960 0.61 -0.3
868,827 - ABZR86_RS03960 0.61 -0.1
868,827 - ABZR86_RS03960 0.61 -0.4
868,827 - ABZR86_RS03960 0.61 -0.5
868,897 + ABZR86_RS03960 0.69 -0.3
868,897 + ABZR86_RS03960 0.69 -0.8
869,147 + +0.1
869,147 + +0.1
869,147 + -0.8
869,147 + +0.7
869,147 + -0.3
869,148 - +0.1
869,229 + -0.4
869,229 + -0.2
869,229 + -0.7
869,299 + +0.0
869,536 + ABZR86_RS03965 0.20 +0.7
869,589 + ABZR86_RS03965 0.25 +0.3
869,589 + ABZR86_RS03965 0.25 -0.3
869,590 - ABZR86_RS03965 0.25 -0.6
869,590 - ABZR86_RS03965 0.25 +0.1
869,675 - ABZR86_RS03965 0.33 +0.4
869,680 + ABZR86_RS03965 0.34 +0.3
869,710 + ABZR86_RS03965 0.37 +0.2
869,711 - ABZR86_RS03965 0.37 -0.5
869,797 + ABZR86_RS03965 0.45 -0.4
869,797 + ABZR86_RS03965 0.45 +0.4
869,797 + ABZR86_RS03965 0.45 -1.0
869,798 - ABZR86_RS03965 0.46 -0.5
869,798 - ABZR86_RS03965 0.46 -0.3
869,798 - ABZR86_RS03965 0.46 -0.3
869,798 - ABZR86_RS03965 0.46 +0.9
869,798 - ABZR86_RS03965 0.46 +0.0
869,824 + ABZR86_RS03965 0.48 -0.7
869,825 - ABZR86_RS03965 0.48 +1.1
870,028 + ABZR86_RS03965 0.68 -0.1
870,028 + ABZR86_RS03965 0.68 -0.2
870,029 - ABZR86_RS03965 0.68 +0.4
870,029 - ABZR86_RS03965 0.68 +0.3
870,085 + ABZR86_RS03965 0.74 -0.5
870,085 + ABZR86_RS03965 0.74 +0.1
870,085 + ABZR86_RS03965 0.74 +0.5
870,086 - ABZR86_RS03965 0.74 -0.6
870,086 - ABZR86_RS03965 0.74 +0.3
870,086 - ABZR86_RS03965 0.74 -0.5
870,086 - ABZR86_RS03965 0.74 -0.1
870,086 - ABZR86_RS03965 0.74 +1.0
870,086 - ABZR86_RS03965 0.74 +0.3
870,086 - ABZR86_RS03965 0.74 -0.7
870,107 + ABZR86_RS03965 0.76 -0.3
870,107 + ABZR86_RS03965 0.76 -0.7
870,119 - ABZR86_RS03965 0.77 -0.5

Or see this region's nucleotide sequence