Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03035 and ABZR86_RS03040 are separated by 74 nucleotides ABZR86_RS03040 and ABZR86_RS03045 are separated by 29 nucleotides ABZR86_RS03045 and ABZR86_RS03050 overlap by 4 nucleotides ABZR86_RS03050 and ABZR86_RS03055 are separated by 120 nucleotides ABZR86_RS03055 and ABZR86_RS03060 are separated by 50 nucleotides
ABZR86_RS03035: ABZR86_RS03035 - CBS domain-containing protein, at 620,532 to 620,966
_RS03035
ABZR86_RS03040: ABZR86_RS03040 - hypothetical protein, at 621,041 to 621,292
_RS03040
ABZR86_RS03045: ABZR86_RS03045 - hypothetical protein, at 621,322 to 621,630
_RS03045
ABZR86_RS03050: ABZR86_RS03050 - excinuclease ABC subunit UvrA, at 621,627 to 624,035
_RS03050
ABZR86_RS03055: ABZR86_RS03055 - VOC family protein, at 624,156 to 624,566
_RS03055
ABZR86_RS03060: ABZR86_RS03060 - helix-turn-helix transcriptional regulator, at 624,617 to 625,066
_RS03060
Position (kb) 621
622
623
624
625 Strain fitness (log2 ratio) -1
0
1
2 at 620.848 kb on + strand, within ABZR86_RS03035 at 621.628 kb on + strand at 621.628 kb on + strand at 621.685 kb on + strand at 621.685 kb on + strand at 621.685 kb on + strand at 621.685 kb on + strand at 621.940 kb on + strand, within ABZR86_RS03050 at 621.940 kb on + strand, within ABZR86_RS03050 at 621.940 kb on + strand, within ABZR86_RS03050 at 621.940 kb on + strand, within ABZR86_RS03050 at 621.941 kb on - strand, within ABZR86_RS03050 at 621.941 kb on - strand, within ABZR86_RS03050 at 621.941 kb on - strand, within ABZR86_RS03050 at 621.941 kb on - strand, within ABZR86_RS03050 at 621.941 kb on - strand, within ABZR86_RS03050 at 621.941 kb on - strand, within ABZR86_RS03050 at 622.171 kb on + strand, within ABZR86_RS03050 at 622.172 kb on - strand, within ABZR86_RS03050 at 622.172 kb on - strand, within ABZR86_RS03050 at 622.172 kb on - strand, within ABZR86_RS03050 at 622.172 kb on - strand, within ABZR86_RS03050 at 622.172 kb on - strand, within ABZR86_RS03050 at 622.172 kb on - strand, within ABZR86_RS03050 at 622.172 kb on - strand, within ABZR86_RS03050 at 622.172 kb on - strand, within ABZR86_RS03050 at 622.254 kb on - strand, within ABZR86_RS03050 at 622.255 kb on + strand, within ABZR86_RS03050 at 622.255 kb on + strand, within ABZR86_RS03050 at 622.255 kb on + strand, within ABZR86_RS03050 at 622.256 kb on - strand, within ABZR86_RS03050 at 622.256 kb on - strand, within ABZR86_RS03050 at 622.256 kb on - strand, within ABZR86_RS03050 at 622.256 kb on - strand, within ABZR86_RS03050 at 622.256 kb on - strand, within ABZR86_RS03050 at 622.256 kb on - strand, within ABZR86_RS03050 at 622.256 kb on - strand, within ABZR86_RS03050 at 622.256 kb on - strand, within ABZR86_RS03050 at 622.281 kb on - strand, within ABZR86_RS03050 at 622.281 kb on - strand, within ABZR86_RS03050 at 622.373 kb on + strand, within ABZR86_RS03050 at 622.373 kb on + strand, within ABZR86_RS03050 at 622.373 kb on + strand, within ABZR86_RS03050 at 622.375 kb on + strand, within ABZR86_RS03050 at 622.375 kb on + strand, within ABZR86_RS03050 at 622.375 kb on + strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.376 kb on - strand, within ABZR86_RS03050 at 622.680 kb on + strand, within ABZR86_RS03050 at 622.867 kb on + strand, within ABZR86_RS03050 at 622.867 kb on + strand, within ABZR86_RS03050 at 622.867 kb on + strand, within ABZR86_RS03050 at 622.867 kb on + strand, within ABZR86_RS03050 at 622.867 kb on + strand, within ABZR86_RS03050 at 622.867 kb on + strand, within ABZR86_RS03050 at 622.867 kb on + strand, within ABZR86_RS03050 at 622.867 kb on + strand, within ABZR86_RS03050 at 622.868 kb on - strand, within ABZR86_RS03050 at 622.868 kb on - strand, within ABZR86_RS03050 at 622.868 kb on - strand, within ABZR86_RS03050 at 622.868 kb on - strand, within ABZR86_RS03050 at 622.868 kb on - strand, within ABZR86_RS03050 at 622.868 kb on - strand, within ABZR86_RS03050 at 622.966 kb on + strand, within ABZR86_RS03050 at 622.967 kb on - strand, within ABZR86_RS03050 at 622.967 kb on - strand, within ABZR86_RS03050 at 623.272 kb on + strand, within ABZR86_RS03050 at 623.273 kb on - strand, within ABZR86_RS03050 at 623.273 kb on - strand, within ABZR86_RS03050 at 623.273 kb on - strand, within ABZR86_RS03050 at 623.317 kb on + strand, within ABZR86_RS03050 at 623.317 kb on + strand, within ABZR86_RS03050 at 623.318 kb on - strand, within ABZR86_RS03050 at 623.423 kb on - strand, within ABZR86_RS03050 at 623.470 kb on + strand, within ABZR86_RS03050 at 623.470 kb on + strand, within ABZR86_RS03050 at 623.471 kb on - strand, within ABZR86_RS03050 at 623.471 kb on - strand, within ABZR86_RS03050 at 623.648 kb on + strand, within ABZR86_RS03050 at 623.836 kb on + strand at 623.836 kb on + strand at 623.836 kb on + strand at 623.836 kb on + strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 624.056 kb on + strand at 624.056 kb on + strand at 624.057 kb on - strand at 624.057 kb on - strand at 624.057 kb on - strand at 624.057 kb on - strand at 624.138 kb on + strand at 624.139 kb on - strand at 624.139 kb on - strand at 624.139 kb on - strand at 624.397 kb on + strand, within ABZR86_RS03055 at 624.624 kb on - strand at 624.879 kb on + strand, within ABZR86_RS03060 at 624.880 kb on - strand, within ABZR86_RS03060 at 624.880 kb on - strand, within ABZR86_RS03060 at 624.880 kb on - strand, within ABZR86_RS03060 at 624.984 kb on + strand, within ABZR86_RS03060
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 620,848 + ABZR86_RS03035 0.73 -0.9 621,628 + +0.1 621,628 + +0.2 621,685 + -0.4 621,685 + +1.3 621,685 + -0.6 621,685 + +0.0 621,940 + ABZR86_RS03050 0.13 +0.6 621,940 + ABZR86_RS03050 0.13 +0.6 621,940 + ABZR86_RS03050 0.13 +0.4 621,940 + ABZR86_RS03050 0.13 +0.4 621,941 - ABZR86_RS03050 0.13 -0.5 621,941 - ABZR86_RS03050 0.13 -0.3 621,941 - ABZR86_RS03050 0.13 -0.4 621,941 - ABZR86_RS03050 0.13 -0.1 621,941 - ABZR86_RS03050 0.13 -0.8 621,941 - ABZR86_RS03050 0.13 +0.1 622,171 + ABZR86_RS03050 0.23 +0.1 622,172 - ABZR86_RS03050 0.23 -0.7 622,172 - ABZR86_RS03050 0.23 -0.8 622,172 - ABZR86_RS03050 0.23 +0.4 622,172 - ABZR86_RS03050 0.23 +0.0 622,172 - ABZR86_RS03050 0.23 +0.0 622,172 - ABZR86_RS03050 0.23 +0.3 622,172 - ABZR86_RS03050 0.23 -0.2 622,172 - ABZR86_RS03050 0.23 -0.7 622,254 - ABZR86_RS03050 0.26 +0.3 622,255 + ABZR86_RS03050 0.26 +1.4 622,255 + ABZR86_RS03050 0.26 -0.6 622,255 + ABZR86_RS03050 0.26 -0.2 622,256 - ABZR86_RS03050 0.26 -0.0 622,256 - ABZR86_RS03050 0.26 -0.4 622,256 - ABZR86_RS03050 0.26 -0.4 622,256 - ABZR86_RS03050 0.26 -0.1 622,256 - ABZR86_RS03050 0.26 -0.6 622,256 - ABZR86_RS03050 0.26 -0.0 622,256 - ABZR86_RS03050 0.26 +0.2 622,256 - ABZR86_RS03050 0.26 -0.4 622,281 - ABZR86_RS03050 0.27 -1.5 622,281 - ABZR86_RS03050 0.27 +0.3 622,373 + ABZR86_RS03050 0.31 -0.7 622,373 + ABZR86_RS03050 0.31 +0.4 622,373 + ABZR86_RS03050 0.31 +0.1 622,375 + ABZR86_RS03050 0.31 -0.5 622,375 + ABZR86_RS03050 0.31 -0.7 622,375 + ABZR86_RS03050 0.31 -0.3 622,376 - ABZR86_RS03050 0.31 -0.4 622,376 - ABZR86_RS03050 0.31 -0.2 622,376 - ABZR86_RS03050 0.31 +0.2 622,376 - ABZR86_RS03050 0.31 -0.3 622,376 - ABZR86_RS03050 0.31 +0.2 622,376 - ABZR86_RS03050 0.31 -1.3 622,376 - ABZR86_RS03050 0.31 +0.0 622,376 - ABZR86_RS03050 0.31 +0.6 622,376 - ABZR86_RS03050 0.31 -0.4 622,680 + ABZR86_RS03050 0.44 -0.5 622,867 + ABZR86_RS03050 0.51 +0.2 622,867 + ABZR86_RS03050 0.51 +1.1 622,867 + ABZR86_RS03050 0.51 -0.1 622,867 + ABZR86_RS03050 0.51 -0.3 622,867 + ABZR86_RS03050 0.51 -0.3 622,867 + ABZR86_RS03050 0.51 +0.1 622,867 + ABZR86_RS03050 0.51 +0.2 622,867 + ABZR86_RS03050 0.51 -0.1 622,868 - ABZR86_RS03050 0.52 -1.3 622,868 - ABZR86_RS03050 0.52 +0.2 622,868 - ABZR86_RS03050 0.52 -0.6 622,868 - ABZR86_RS03050 0.52 -0.9 622,868 - ABZR86_RS03050 0.52 -0.9 622,868 - ABZR86_RS03050 0.52 +0.7 622,966 + ABZR86_RS03050 0.56 +0.5 622,967 - ABZR86_RS03050 0.56 -0.2 622,967 - ABZR86_RS03050 0.56 -0.1 623,272 + ABZR86_RS03050 0.68 +0.4 623,273 - ABZR86_RS03050 0.68 -0.7 623,273 - ABZR86_RS03050 0.68 +0.7 623,273 - ABZR86_RS03050 0.68 -0.6 623,317 + ABZR86_RS03050 0.70 -0.2 623,317 + ABZR86_RS03050 0.70 +0.0 623,318 - ABZR86_RS03050 0.70 +0.7 623,423 - ABZR86_RS03050 0.75 -0.2 623,470 + ABZR86_RS03050 0.77 +0.0 623,470 + ABZR86_RS03050 0.77 +0.6 623,471 - ABZR86_RS03050 0.77 -0.5 623,471 - ABZR86_RS03050 0.77 -0.6 623,648 + ABZR86_RS03050 0.84 +0.2 623,836 + -0.9 623,836 + +1.0 623,836 + +0.0 623,836 + -0.6 623,837 - +0.2 623,837 - +0.2 623,837 - +1.4 623,837 - -1.1 624,056 + +0.3 624,056 + +0.0 624,057 - -0.6 624,057 - +0.5 624,057 - -0.1 624,057 - -0.4 624,138 + +0.8 624,139 - +2.1 624,139 - -0.1 624,139 - +0.4 624,397 + ABZR86_RS03055 0.59 +0.1 624,624 - +0.2 624,879 + ABZR86_RS03060 0.58 -0.1 624,880 - ABZR86_RS03060 0.58 +0.2 624,880 - ABZR86_RS03060 0.58 +0.7 624,880 - ABZR86_RS03060 0.58 -0.1 624,984 + ABZR86_RS03060 0.82 -0.8
Or see this region's nucleotide sequence