Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02780 and ABZR86_RS02785 are separated by 141 nucleotides ABZR86_RS02785 and ABZR86_RS02790 are separated by 258 nucleotides ABZR86_RS02790 and ABZR86_RS02795 are separated by 4 nucleotides ABZR86_RS02795 and ABZR86_RS02800 overlap by 4 nucleotides
ABZR86_RS02780: ABZR86_RS02780 - agmatine/peptidylarginine deiminase, at 561,081 to 562,118
_RS02780
ABZR86_RS02785: ABZR86_RS02785 - hypothetical protein, at 562,260 to 562,598
_RS02785
ABZR86_RS02790: ABZR86_RS02790 - ATP-binding cassette domain-containing protein, at 562,857 to 564,755
_RS02790
ABZR86_RS02795: ABZR86_RS02795 - phosphoglycerate mutase, at 564,760 to 565,674
_RS02795
ABZR86_RS02800: ABZR86_RS02800 - single-stranded-DNA-specific exonuclease RecJ, at 565,671 to 567,389
_RS02800
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 562.155 kb on - strand at 562.155 kb on - strand at 562.155 kb on - strand at 562.240 kb on + strand at 562.240 kb on + strand at 562.241 kb on - strand at 562.302 kb on - strand, within ABZR86_RS02785 at 562.302 kb on - strand, within ABZR86_RS02785 at 562.302 kb on - strand, within ABZR86_RS02785 at 562.339 kb on + strand, within ABZR86_RS02785 at 562.339 kb on + strand, within ABZR86_RS02785 at 562.358 kb on - strand, within ABZR86_RS02785 at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.650 kb on + strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.651 kb on - strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.654 kb on + strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.655 kb on - strand at 562.713 kb on + strand at 562.713 kb on + strand at 562.737 kb on + strand at 562.738 kb on - strand at 562.738 kb on - strand at 562.803 kb on + strand at 562.803 kb on + strand at 562.835 kb on + strand at 562.845 kb on + strand at 562.845 kb on + strand at 562.845 kb on + strand at 562.845 kb on + strand at 562.845 kb on + strand at 562.845 kb on + strand at 562.845 kb on + strand at 562.845 kb on + strand at 562.846 kb on - strand at 562.846 kb on - strand at 562.846 kb on - strand at 562.846 kb on - strand at 562.846 kb on - strand at 562.846 kb on - strand at 562.846 kb on - strand at 563.103 kb on + strand, within ABZR86_RS02790 at 563.103 kb on + strand, within ABZR86_RS02790 at 563.103 kb on + strand, within ABZR86_RS02790 at 563.104 kb on - strand, within ABZR86_RS02790 at 563.104 kb on - strand, within ABZR86_RS02790 at 563.104 kb on - strand, within ABZR86_RS02790 at 563.104 kb on - strand, within ABZR86_RS02790 at 563.224 kb on - strand, within ABZR86_RS02790 at 563.323 kb on + strand, within ABZR86_RS02790 at 563.323 kb on + strand, within ABZR86_RS02790 at 563.324 kb on - strand, within ABZR86_RS02790 at 563.324 kb on - strand, within ABZR86_RS02790 at 563.440 kb on - strand, within ABZR86_RS02790 at 563.535 kb on + strand, within ABZR86_RS02790 at 563.536 kb on - strand, within ABZR86_RS02790 at 563.536 kb on - strand, within ABZR86_RS02790 at 563.547 kb on + strand, within ABZR86_RS02790 at 563.547 kb on + strand, within ABZR86_RS02790 at 563.547 kb on + strand, within ABZR86_RS02790 at 563.547 kb on + strand, within ABZR86_RS02790 at 563.547 kb on + strand, within ABZR86_RS02790 at 563.547 kb on + strand, within ABZR86_RS02790 at 563.548 kb on - strand, within ABZR86_RS02790 at 563.548 kb on - strand, within ABZR86_RS02790 at 563.548 kb on - strand, within ABZR86_RS02790 at 563.925 kb on - strand, within ABZR86_RS02790 at 564.010 kb on - strand, within ABZR86_RS02790 at 564.417 kb on + strand, within ABZR86_RS02790 at 564.417 kb on + strand, within ABZR86_RS02790 at 564.417 kb on + strand, within ABZR86_RS02790 at 564.418 kb on - strand, within ABZR86_RS02790 at 564.418 kb on - strand, within ABZR86_RS02790 at 564.418 kb on - strand, within ABZR86_RS02790 at 564.418 kb on - strand, within ABZR86_RS02790 at 564.578 kb on + strand at 564.578 kb on + strand at 564.579 kb on - strand at 564.579 kb on - strand at 564.639 kb on + strand at 564.639 kb on + strand at 564.640 kb on - strand at 564.735 kb on + strand at 564.735 kb on + strand at 564.735 kb on + strand at 564.902 kb on - strand, within ABZR86_RS02795
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 562,155 - +0.0 562,155 - -0.0 562,155 - +0.6 562,240 + -0.4 562,240 + +0.4 562,241 - +0.6 562,302 - ABZR86_RS02785 0.12 -0.5 562,302 - ABZR86_RS02785 0.12 +0.2 562,302 - ABZR86_RS02785 0.12 +0.0 562,339 + ABZR86_RS02785 0.23 -1.0 562,339 + ABZR86_RS02785 0.23 -0.0 562,358 - ABZR86_RS02785 0.29 -0.2 562,650 + +0.3 562,650 + +0.1 562,650 + +2.0 562,650 + -0.6 562,650 + -0.9 562,650 + +0.2 562,650 + -0.4 562,650 + -0.4 562,650 + +0.2 562,650 + +0.3 562,650 + -0.6 562,650 + +0.2 562,650 + +0.3 562,650 + -0.9 562,650 + +0.5 562,650 + -2.3 562,650 + +0.4 562,650 + -0.3 562,650 + +0.6 562,650 + +0.0 562,650 + +0.1 562,651 - +0.4 562,651 - -0.4 562,651 - -0.5 562,651 - +0.2 562,651 - +0.6 562,651 - -0.5 562,651 - +1.0 562,651 - +0.4 562,651 - +0.5 562,651 - +0.4 562,651 - -0.5 562,651 - +0.9 562,651 - +0.1 562,651 - +0.9 562,651 - +0.3 562,651 - +1.5 562,651 - -1.5 562,651 - -0.1 562,651 - +0.2 562,651 - -0.2 562,651 - +0.3 562,651 - -0.1 562,651 - +0.2 562,651 - -0.1 562,651 - -0.4 562,654 + +0.2 562,654 + -2.0 562,654 + +0.2 562,654 + +0.3 562,654 + -0.1 562,654 + +0.1 562,654 + -0.9 562,654 + -1.2 562,654 + +0.5 562,654 + -0.7 562,655 - -0.3 562,655 - -0.8 562,655 - -0.1 562,655 - -0.6 562,655 - +0.1 562,655 - -0.4 562,655 - -1.0 562,655 - -0.3 562,655 - -0.3 562,655 - -0.2 562,655 - -0.3 562,713 + +0.6 562,713 + -0.2 562,737 + -0.8 562,738 - +0.2 562,738 - -0.1 562,803 + +0.7 562,803 + -0.1 562,835 + +0.2 562,845 + +0.2 562,845 + +0.6 562,845 + -0.5 562,845 + -0.0 562,845 + +0.8 562,845 + -0.6 562,845 + +0.3 562,845 + -0.8 562,846 - +0.2 562,846 - +0.9 562,846 - -0.5 562,846 - +1.0 562,846 - +0.9 562,846 - -0.1 562,846 - +0.2 563,103 + ABZR86_RS02790 0.13 +0.9 563,103 + ABZR86_RS02790 0.13 +0.6 563,103 + ABZR86_RS02790 0.13 -0.3 563,104 - ABZR86_RS02790 0.13 +2.1 563,104 - ABZR86_RS02790 0.13 +1.9 563,104 - ABZR86_RS02790 0.13 +2.0 563,104 - ABZR86_RS02790 0.13 +1.3 563,224 - ABZR86_RS02790 0.19 +2.1 563,323 + ABZR86_RS02790 0.25 +0.6 563,323 + ABZR86_RS02790 0.25 +0.3 563,324 - ABZR86_RS02790 0.25 +0.9 563,324 - ABZR86_RS02790 0.25 +0.9 563,440 - ABZR86_RS02790 0.31 +2.2 563,535 + ABZR86_RS02790 0.36 -0.1 563,536 - ABZR86_RS02790 0.36 +0.3 563,536 - ABZR86_RS02790 0.36 +2.5 563,547 + ABZR86_RS02790 0.36 -0.1 563,547 + ABZR86_RS02790 0.36 +0.1 563,547 + ABZR86_RS02790 0.36 +0.8 563,547 + ABZR86_RS02790 0.36 +0.3 563,547 + ABZR86_RS02790 0.36 +0.5 563,547 + ABZR86_RS02790 0.36 +0.1 563,548 - ABZR86_RS02790 0.36 +2.3 563,548 - ABZR86_RS02790 0.36 +2.1 563,548 - ABZR86_RS02790 0.36 +2.1 563,925 - ABZR86_RS02790 0.56 +2.8 564,010 - ABZR86_RS02790 0.61 +2.0 564,417 + ABZR86_RS02790 0.82 +0.5 564,417 + ABZR86_RS02790 0.82 +0.5 564,417 + ABZR86_RS02790 0.82 -1.5 564,418 - ABZR86_RS02790 0.82 +0.4 564,418 - ABZR86_RS02790 0.82 +1.0 564,418 - ABZR86_RS02790 0.82 +0.0 564,418 - ABZR86_RS02790 0.82 +1.3 564,578 + +0.0 564,578 + +0.2 564,579 - +1.2 564,579 - +2.6 564,639 + +0.7 564,639 + +2.3 564,640 - +3.7 564,735 + -0.6 564,735 + -0.3 564,735 + +0.1 564,902 - ABZR86_RS02795 0.16 +4.3
Or see this region's nucleotide sequence