Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02225

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02220 and ABZR86_RS02225 are separated by 85 nucleotidesABZR86_RS02225 and ABZR86_RS02230 are separated by 39 nucleotides ABZR86_RS02220: ABZR86_RS02220 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 477,131 to 478,216 _RS02220 ABZR86_RS02225: ABZR86_RS02225 - prephenate dehydratase, at 478,302 to 479,390 _RS02225 ABZR86_RS02230: ABZR86_RS02230 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 479,430 to 480,734 _RS02230 Position (kb) 478 479 480Strain fitness (log2 ratio) -2 -1 0 1at 477.329 kb on + strand, within ABZR86_RS02220at 477.330 kb on - strand, within ABZR86_RS02220at 477.416 kb on + strand, within ABZR86_RS02220at 477.416 kb on + strand, within ABZR86_RS02220at 477.416 kb on + strand, within ABZR86_RS02220at 477.416 kb on + strand, within ABZR86_RS02220at 477.417 kb on - strand, within ABZR86_RS02220at 477.417 kb on - strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.467 kb on + strand, within ABZR86_RS02220at 477.509 kb on + strand, within ABZR86_RS02220at 477.510 kb on - strand, within ABZR86_RS02220at 477.510 kb on - strand, within ABZR86_RS02220at 477.510 kb on - strand, within ABZR86_RS02220at 477.560 kb on + strand, within ABZR86_RS02220at 477.560 kb on + strand, within ABZR86_RS02220at 477.560 kb on + strand, within ABZR86_RS02220at 477.561 kb on - strand, within ABZR86_RS02220at 477.561 kb on - strand, within ABZR86_RS02220at 477.569 kb on + strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.570 kb on - strand, within ABZR86_RS02220at 477.603 kb on - strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.701 kb on + strand, within ABZR86_RS02220at 477.702 kb on - strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.850 kb on + strand, within ABZR86_RS02220at 477.851 kb on - strand, within ABZR86_RS02220at 477.851 kb on - strand, within ABZR86_RS02220at 477.851 kb on - strand, within ABZR86_RS02220at 477.851 kb on - strand, within ABZR86_RS02220at 477.863 kb on + strand, within ABZR86_RS02220at 477.863 kb on + strand, within ABZR86_RS02220at 477.864 kb on - strand, within ABZR86_RS02220at 477.864 kb on - strand, within ABZR86_RS02220at 477.953 kb on + strand, within ABZR86_RS02220at 477.954 kb on - strand, within ABZR86_RS02220at 477.980 kb on + strand, within ABZR86_RS02220at 477.981 kb on - strand, within ABZR86_RS02220at 477.983 kb on + strand, within ABZR86_RS02220at 477.983 kb on + strand, within ABZR86_RS02220at 477.983 kb on + strand, within ABZR86_RS02220at 477.983 kb on + strand, within ABZR86_RS02220at 477.984 kb on - strand, within ABZR86_RS02220at 477.984 kb on - strand, within ABZR86_RS02220at 477.984 kb on - strand, within ABZR86_RS02220at 477.984 kb on - strand, within ABZR86_RS02220at 478.142 kb on + strandat 478.142 kb on + strandat 478.142 kb on + strandat 478.143 kb on - strandat 478.143 kb on - strandat 478.257 kb on + strandat 478.257 kb on + strandat 478.257 kb on + strandat 478.258 kb on - strandat 478.258 kb on - strandat 478.258 kb on - strandat 478.258 kb on - strandat 478.283 kb on + strandat 478.283 kb on + strandat 478.284 kb on - strandat 478.284 kb on - strandat 478.446 kb on + strand, within ABZR86_RS02225at 478.446 kb on + strand, within ABZR86_RS02225at 478.447 kb on - strand, within ABZR86_RS02225at 478.447 kb on - strand, within ABZR86_RS02225at 478.447 kb on - strand, within ABZR86_RS02225at 478.876 kb on - strand, within ABZR86_RS02225at 479.034 kb on + strand, within ABZR86_RS02225at 479.035 kb on - strand, within ABZR86_RS02225at 479.181 kb on + strand, within ABZR86_RS02225at 479.181 kb on + strand, within ABZR86_RS02225at 479.182 kb on - strand, within ABZR86_RS02225at 479.266 kb on - strand, within ABZR86_RS02225at 479.370 kb on + strandat 479.555 kb on + strandat 479.556 kb on - strandat 479.973 kb on + strand, within ABZR86_RS02230at 479.974 kb on - strand, within ABZR86_RS02230at 480.021 kb on + strand, within ABZR86_RS02230at 480.021 kb on + strand, within ABZR86_RS02230

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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477,329 + ABZR86_RS02220 0.18 -0.0
477,330 - ABZR86_RS02220 0.18 +0.0
477,416 + ABZR86_RS02220 0.26 -1.0
477,416 + ABZR86_RS02220 0.26 -1.4
477,416 + ABZR86_RS02220 0.26 -0.4
477,416 + ABZR86_RS02220 0.26 -0.1
477,417 - ABZR86_RS02220 0.26 +0.3
477,417 - ABZR86_RS02220 0.26 -0.3
477,467 + ABZR86_RS02220 0.31 -2.1
477,467 + ABZR86_RS02220 0.31 -0.6
477,467 + ABZR86_RS02220 0.31 -0.3
477,467 + ABZR86_RS02220 0.31 -0.4
477,467 + ABZR86_RS02220 0.31 -0.0
477,467 + ABZR86_RS02220 0.31 -1.5
477,467 + ABZR86_RS02220 0.31 -0.5
477,509 + ABZR86_RS02220 0.35 +0.3
477,510 - ABZR86_RS02220 0.35 -0.2
477,510 - ABZR86_RS02220 0.35 +0.5
477,510 - ABZR86_RS02220 0.35 -0.3
477,560 + ABZR86_RS02220 0.40 -0.0
477,560 + ABZR86_RS02220 0.40 +0.5
477,560 + ABZR86_RS02220 0.40 -1.0
477,561 - ABZR86_RS02220 0.40 -0.4
477,561 - ABZR86_RS02220 0.40 -0.6
477,569 + ABZR86_RS02220 0.40 -0.3
477,570 - ABZR86_RS02220 0.40 +0.2
477,570 - ABZR86_RS02220 0.40 -0.2
477,570 - ABZR86_RS02220 0.40 +0.0
477,570 - ABZR86_RS02220 0.40 -0.3
477,570 - ABZR86_RS02220 0.40 -0.4
477,603 - ABZR86_RS02220 0.43 -0.1
477,701 + ABZR86_RS02220 0.52 -0.3
477,701 + ABZR86_RS02220 0.52 -0.7
477,701 + ABZR86_RS02220 0.52 +0.2
477,701 + ABZR86_RS02220 0.52 -1.3
477,701 + ABZR86_RS02220 0.52 -0.7
477,702 - ABZR86_RS02220 0.53 -0.2
477,850 + ABZR86_RS02220 0.66 -1.7
477,850 + ABZR86_RS02220 0.66 +0.1
477,850 + ABZR86_RS02220 0.66 -0.5
477,850 + ABZR86_RS02220 0.66 +0.5
477,850 + ABZR86_RS02220 0.66 -0.4
477,851 - ABZR86_RS02220 0.66 +1.3
477,851 - ABZR86_RS02220 0.66 +0.9
477,851 - ABZR86_RS02220 0.66 -0.3
477,851 - ABZR86_RS02220 0.66 -0.4
477,863 + ABZR86_RS02220 0.67 -1.0
477,863 + ABZR86_RS02220 0.67 -0.1
477,864 - ABZR86_RS02220 0.67 -0.2
477,864 - ABZR86_RS02220 0.67 +0.6
477,953 + ABZR86_RS02220 0.76 -0.4
477,954 - ABZR86_RS02220 0.76 +0.4
477,980 + ABZR86_RS02220 0.78 +0.4
477,981 - ABZR86_RS02220 0.78 +1.3
477,983 + ABZR86_RS02220 0.78 -0.2
477,983 + ABZR86_RS02220 0.78 -0.5
477,983 + ABZR86_RS02220 0.78 +0.1
477,983 + ABZR86_RS02220 0.78 -0.5
477,984 - ABZR86_RS02220 0.79 -0.4
477,984 - ABZR86_RS02220 0.79 -0.4
477,984 - ABZR86_RS02220 0.79 -1.9
477,984 - ABZR86_RS02220 0.79 -0.1
478,142 + -2.4
478,142 + -0.5
478,142 + -0.9
478,143 - -0.0
478,143 - -0.7
478,257 + -0.5
478,257 + -1.1
478,257 + -0.1
478,258 - -1.3
478,258 - -0.2
478,258 - +0.4
478,258 - -1.3
478,283 + -0.1
478,283 + -0.4
478,284 - -0.6
478,284 - +0.3
478,446 + ABZR86_RS02225 0.13 +0.0
478,446 + ABZR86_RS02225 0.13 -1.5
478,447 - ABZR86_RS02225 0.13 -2.0
478,447 - ABZR86_RS02225 0.13 +0.2
478,447 - ABZR86_RS02225 0.13 +0.5
478,876 - ABZR86_RS02225 0.53 -1.8
479,034 + ABZR86_RS02225 0.67 -0.5
479,035 - ABZR86_RS02225 0.67 -1.1
479,181 + ABZR86_RS02225 0.81 -0.4
479,181 + ABZR86_RS02225 0.81 +0.3
479,182 - ABZR86_RS02225 0.81 +0.4
479,266 - ABZR86_RS02225 0.89 -0.1
479,370 + -0.2
479,555 + -1.7
479,556 - -1.1
479,973 + ABZR86_RS02230 0.42 -2.7
479,974 - ABZR86_RS02230 0.42 -1.8
480,021 + ABZR86_RS02230 0.45 -0.8
480,021 + ABZR86_RS02230 0.45 -1.4

Or see this region's nucleotide sequence