Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02120

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02115 and ABZR86_RS02120 are separated by 76 nucleotidesABZR86_RS02120 and ABZR86_RS02125 overlap by 13 nucleotides ABZR86_RS02115: ABZR86_RS02115 - LysR substrate-binding domain-containing protein, at 452,620 to 453,585 _RS02115 ABZR86_RS02120: ABZR86_RS02120 - pyridoxal phosphate-dependent aminotransferase, at 453,662 to 454,807 _RS02120 ABZR86_RS02125: ABZR86_RS02125 - amidohydrolase, at 454,795 to 455,595 _RS02125 Position (kb) 453 454 455Strain fitness (log2 ratio) -2 -1 0 1 2at 452.662 kb on + strandat 452.662 kb on + strandat 452.663 kb on - strandat 452.663 kb on - strandat 452.663 kb on - strandat 452.663 kb on - strandat 452.663 kb on - strandat 452.663 kb on - strandat 452.836 kb on + strand, within ABZR86_RS02115at 452.836 kb on + strand, within ABZR86_RS02115at 452.992 kb on + strand, within ABZR86_RS02115at 452.993 kb on - strand, within ABZR86_RS02115at 452.993 kb on - strand, within ABZR86_RS02115at 453.413 kb on + strand, within ABZR86_RS02115at 453.413 kb on + strand, within ABZR86_RS02115at 453.413 kb on + strand, within ABZR86_RS02115at 453.414 kb on - strand, within ABZR86_RS02115at 453.414 kb on - strand, within ABZR86_RS02115at 453.414 kb on - strand, within ABZR86_RS02115at 453.414 kb on - strand, within ABZR86_RS02115at 453.414 kb on - strand, within ABZR86_RS02115at 453.414 kb on - strand, within ABZR86_RS02115at 453.460 kb on + strand, within ABZR86_RS02115at 453.624 kb on + strandat 453.624 kb on + strandat 453.625 kb on - strandat 453.625 kb on - strandat 453.653 kb on - strandat 453.653 kb on - strandat 453.668 kb on - strandat 453.670 kb on - strandat 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.896 kb on + strand, within ABZR86_RS02120at 453.897 kb on - strand, within ABZR86_RS02120at 453.897 kb on - strand, within ABZR86_RS02120at 453.897 kb on - strand, within ABZR86_RS02120at 453.897 kb on - strand, within ABZR86_RS02120at 453.897 kb on - strand, within ABZR86_RS02120at 453.897 kb on - strand, within ABZR86_RS02120at 454.019 kb on + strand, within ABZR86_RS02120at 454.020 kb on - strand, within ABZR86_RS02120at 454.028 kb on + strand, within ABZR86_RS02120at 454.028 kb on + strand, within ABZR86_RS02120at 454.029 kb on - strand, within ABZR86_RS02120at 454.029 kb on - strand, within ABZR86_RS02120at 454.029 kb on - strand, within ABZR86_RS02120at 454.259 kb on + strand, within ABZR86_RS02120at 454.259 kb on + strand, within ABZR86_RS02120at 454.259 kb on + strand, within ABZR86_RS02120at 454.259 kb on + strand, within ABZR86_RS02120at 454.260 kb on - strand, within ABZR86_RS02120at 454.260 kb on - strand, within ABZR86_RS02120at 454.260 kb on - strand, within ABZR86_RS02120at 454.260 kb on - strand, within ABZR86_RS02120at 454.358 kb on + strand, within ABZR86_RS02120at 454.358 kb on + strand, within ABZR86_RS02120at 454.358 kb on + strand, within ABZR86_RS02120at 454.358 kb on + strand, within ABZR86_RS02120at 454.358 kb on + strand, within ABZR86_RS02120at 454.358 kb on + strand, within ABZR86_RS02120at 454.358 kb on + strand, within ABZR86_RS02120at 454.359 kb on - strand, within ABZR86_RS02120at 454.359 kb on - strand, within ABZR86_RS02120at 454.359 kb on - strand, within ABZR86_RS02120at 454.359 kb on - strand, within ABZR86_RS02120at 454.436 kb on + strand, within ABZR86_RS02120at 454.436 kb on + strand, within ABZR86_RS02120at 454.436 kb on + strand, within ABZR86_RS02120at 454.436 kb on + strand, within ABZR86_RS02120at 454.437 kb on - strand, within ABZR86_RS02120at 454.437 kb on - strand, within ABZR86_RS02120at 454.437 kb on - strand, within ABZR86_RS02120at 454.437 kb on - strand, within ABZR86_RS02120at 454.437 kb on - strand, within ABZR86_RS02120at 454.437 kb on - strand, within ABZR86_RS02120at 454.508 kb on + strand, within ABZR86_RS02120at 454.508 kb on + strand, within ABZR86_RS02120at 454.508 kb on + strand, within ABZR86_RS02120at 454.508 kb on + strand, within ABZR86_RS02120at 454.508 kb on + strand, within ABZR86_RS02120at 454.529 kb on + strand, within ABZR86_RS02120at 454.529 kb on + strand, within ABZR86_RS02120at 454.529 kb on + strand, within ABZR86_RS02120at 454.530 kb on - strand, within ABZR86_RS02120at 454.530 kb on - strand, within ABZR86_RS02120at 454.604 kb on + strand, within ABZR86_RS02120at 454.604 kb on + strand, within ABZR86_RS02120at 454.604 kb on + strand, within ABZR86_RS02120at 454.605 kb on - strand, within ABZR86_RS02120at 454.622 kb on + strand, within ABZR86_RS02120at 454.712 kb on + strandat 454.712 kb on + strandat 454.713 kb on - strandat 454.713 kb on - strandat 454.795 kb on - strandat 454.795 kb on - strandat 454.795 kb on - strandat 454.864 kb on + strandat 454.867 kb on + strandat 454.867 kb on + strandat 454.867 kb on + strandat 454.867 kb on + strandat 454.867 kb on + strandat 455.068 kb on + strand, within ABZR86_RS02125at 455.068 kb on + strand, within ABZR86_RS02125at 455.068 kb on + strand, within ABZR86_RS02125at 455.068 kb on + strand, within ABZR86_RS02125at 455.068 kb on + strand, within ABZR86_RS02125at 455.069 kb on - strand, within ABZR86_RS02125at 455.069 kb on - strand, within ABZR86_RS02125at 455.113 kb on + strand, within ABZR86_RS02125at 455.113 kb on + strand, within ABZR86_RS02125at 455.113 kb on + strand, within ABZR86_RS02125at 455.114 kb on - strand, within ABZR86_RS02125at 455.225 kb on - strand, within ABZR86_RS02125at 455.290 kb on + strand, within ABZR86_RS02125at 455.290 kb on + strand, within ABZR86_RS02125at 455.290 kb on + strand, within ABZR86_RS02125at 455.291 kb on - strand, within ABZR86_RS02125at 455.291 kb on - strand, within ABZR86_RS02125at 455.291 kb on - strand, within ABZR86_RS02125at 455.383 kb on + strand, within ABZR86_RS02125at 455.383 kb on + strand, within ABZR86_RS02125at 455.383 kb on + strand, within ABZR86_RS02125at 455.383 kb on + strand, within ABZR86_RS02125at 455.383 kb on + strand, within ABZR86_RS02125at 455.383 kb on + strand, within ABZR86_RS02125at 455.383 kb on + strand, within ABZR86_RS02125at 455.384 kb on - strand, within ABZR86_RS02125at 455.384 kb on - strand, within ABZR86_RS02125at 455.384 kb on - strand, within ABZR86_RS02125at 455.384 kb on - strand, within ABZR86_RS02125at 455.384 kb on - strand, within ABZR86_RS02125at 455.431 kb on + strand, within ABZR86_RS02125at 455.432 kb on - strand, within ABZR86_RS02125at 455.623 kb on - strandat 455.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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452,662 + -0.9
452,662 + -0.5
452,663 - -0.0
452,663 - +0.0
452,663 - -2.0
452,663 - -0.0
452,663 - +0.4
452,663 - +0.2
452,836 + ABZR86_RS02115 0.22 +0.3
452,836 + ABZR86_RS02115 0.22 +0.4
452,992 + ABZR86_RS02115 0.39 +2.3
452,993 - ABZR86_RS02115 0.39 -1.1
452,993 - ABZR86_RS02115 0.39 -0.1
453,413 + ABZR86_RS02115 0.82 +0.7
453,413 + ABZR86_RS02115 0.82 +0.4
453,413 + ABZR86_RS02115 0.82 +0.3
453,414 - ABZR86_RS02115 0.82 -0.4
453,414 - ABZR86_RS02115 0.82 +0.5
453,414 - ABZR86_RS02115 0.82 +1.3
453,414 - ABZR86_RS02115 0.82 +0.3
453,414 - ABZR86_RS02115 0.82 +0.4
453,414 - ABZR86_RS02115 0.82 -0.0
453,460 + ABZR86_RS02115 0.87 -0.6
453,624 + +0.0
453,624 + +0.7
453,625 - -2.0
453,625 - +1.1
453,653 - +0.8
453,653 - -0.5
453,668 - +0.4
453,670 - -0.3
453,896 + ABZR86_RS02120 0.20 -0.1
453,896 + ABZR86_RS02120 0.20 -0.9
453,896 + ABZR86_RS02120 0.20 -0.3
453,896 + ABZR86_RS02120 0.20 -0.6
453,896 + ABZR86_RS02120 0.20 +0.5
453,896 + ABZR86_RS02120 0.20 +0.2
453,896 + ABZR86_RS02120 0.20 -0.7
453,896 + ABZR86_RS02120 0.20 +0.1
453,896 + ABZR86_RS02120 0.20 -0.8
453,896 + ABZR86_RS02120 0.20 +0.5
453,897 - ABZR86_RS02120 0.21 -0.9
453,897 - ABZR86_RS02120 0.21 +0.8
453,897 - ABZR86_RS02120 0.21 +0.4
453,897 - ABZR86_RS02120 0.21 +0.2
453,897 - ABZR86_RS02120 0.21 -0.4
453,897 - ABZR86_RS02120 0.21 -0.2
454,019 + ABZR86_RS02120 0.31 -0.3
454,020 - ABZR86_RS02120 0.31 -0.2
454,028 + ABZR86_RS02120 0.32 +0.0
454,028 + ABZR86_RS02120 0.32 +0.5
454,029 - ABZR86_RS02120 0.32 +1.0
454,029 - ABZR86_RS02120 0.32 -0.4
454,029 - ABZR86_RS02120 0.32 -1.9
454,259 + ABZR86_RS02120 0.52 -0.5
454,259 + ABZR86_RS02120 0.52 -1.5
454,259 + ABZR86_RS02120 0.52 +0.9
454,259 + ABZR86_RS02120 0.52 +1.0
454,260 - ABZR86_RS02120 0.52 -0.7
454,260 - ABZR86_RS02120 0.52 -0.6
454,260 - ABZR86_RS02120 0.52 +1.3
454,260 - ABZR86_RS02120 0.52 -0.2
454,358 + ABZR86_RS02120 0.61 +2.1
454,358 + ABZR86_RS02120 0.61 +0.4
454,358 + ABZR86_RS02120 0.61 +0.5
454,358 + ABZR86_RS02120 0.61 -1.9
454,358 + ABZR86_RS02120 0.61 -0.6
454,358 + ABZR86_RS02120 0.61 -0.6
454,358 + ABZR86_RS02120 0.61 -0.2
454,359 - ABZR86_RS02120 0.61 +0.5
454,359 - ABZR86_RS02120 0.61 -0.1
454,359 - ABZR86_RS02120 0.61 -0.6
454,359 - ABZR86_RS02120 0.61 +0.5
454,436 + ABZR86_RS02120 0.68 +1.2
454,436 + ABZR86_RS02120 0.68 -1.1
454,436 + ABZR86_RS02120 0.68 -1.1
454,436 + ABZR86_RS02120 0.68 +0.0
454,437 - ABZR86_RS02120 0.68 -0.4
454,437 - ABZR86_RS02120 0.68 +0.5
454,437 - ABZR86_RS02120 0.68 +1.6
454,437 - ABZR86_RS02120 0.68 +0.1
454,437 - ABZR86_RS02120 0.68 -0.1
454,437 - ABZR86_RS02120 0.68 -0.7
454,508 + ABZR86_RS02120 0.74 +0.0
454,508 + ABZR86_RS02120 0.74 +0.2
454,508 + ABZR86_RS02120 0.74 -0.3
454,508 + ABZR86_RS02120 0.74 +0.3
454,508 + ABZR86_RS02120 0.74 +1.8
454,529 + ABZR86_RS02120 0.76 -0.7
454,529 + ABZR86_RS02120 0.76 +1.9
454,529 + ABZR86_RS02120 0.76 +0.8
454,530 - ABZR86_RS02120 0.76 +0.5
454,530 - ABZR86_RS02120 0.76 +1.0
454,604 + ABZR86_RS02120 0.82 -0.2
454,604 + ABZR86_RS02120 0.82 -0.1
454,604 + ABZR86_RS02120 0.82 +0.2
454,605 - ABZR86_RS02120 0.82 -1.3
454,622 + ABZR86_RS02120 0.84 +0.2
454,712 + -0.4
454,712 + +0.2
454,713 - -1.3
454,713 - -0.2
454,795 - -0.8
454,795 - +0.1
454,795 - -0.7
454,864 + -1.0
454,867 + +0.9
454,867 + -0.8
454,867 + +1.0
454,867 + +0.3
454,867 + +2.2
455,068 + ABZR86_RS02125 0.34 +0.5
455,068 + ABZR86_RS02125 0.34 +0.1
455,068 + ABZR86_RS02125 0.34 +0.4
455,068 + ABZR86_RS02125 0.34 -0.1
455,068 + ABZR86_RS02125 0.34 +0.9
455,069 - ABZR86_RS02125 0.34 -0.7
455,069 - ABZR86_RS02125 0.34 -1.5
455,113 + ABZR86_RS02125 0.40 -1.2
455,113 + ABZR86_RS02125 0.40 +0.3
455,113 + ABZR86_RS02125 0.40 +0.4
455,114 - ABZR86_RS02125 0.40 -1.6
455,225 - ABZR86_RS02125 0.54 +0.2
455,290 + ABZR86_RS02125 0.62 -0.3
455,290 + ABZR86_RS02125 0.62 -0.7
455,290 + ABZR86_RS02125 0.62 -0.7
455,291 - ABZR86_RS02125 0.62 +1.0
455,291 - ABZR86_RS02125 0.62 -0.8
455,291 - ABZR86_RS02125 0.62 -0.1
455,383 + ABZR86_RS02125 0.73 +0.1
455,383 + ABZR86_RS02125 0.73 +0.7
455,383 + ABZR86_RS02125 0.73 -0.1
455,383 + ABZR86_RS02125 0.73 +0.0
455,383 + ABZR86_RS02125 0.73 +0.4
455,383 + ABZR86_RS02125 0.73 +1.2
455,383 + ABZR86_RS02125 0.73 -0.5
455,384 - ABZR86_RS02125 0.74 -0.1
455,384 - ABZR86_RS02125 0.74 -0.6
455,384 - ABZR86_RS02125 0.74 +0.3
455,384 - ABZR86_RS02125 0.74 -1.2
455,384 - ABZR86_RS02125 0.74 -0.4
455,431 + ABZR86_RS02125 0.79 -0.1
455,432 - ABZR86_RS02125 0.80 -0.5
455,623 - -0.4
455,667 - +1.9

Or see this region's nucleotide sequence