Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01520

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01515 and ABZR86_RS01520 are separated by 736 nucleotidesABZR86_RS01520 and ABZR86_RS01525 are separated by 166 nucleotides ABZR86_RS01515: ABZR86_RS01515 - hypothetical protein, at 329,404 to 330,375 _RS01515 ABZR86_RS01520: ABZR86_RS01520 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 331,112 to 332,626 _RS01520 ABZR86_RS01525: ABZR86_RS01525 - ATP-binding protein, at 332,793 to 334,202 _RS01525 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1at 330.128 kb on + strand, within ABZR86_RS01515at 330.129 kb on - strand, within ABZR86_RS01515at 330.205 kb on - strand, within ABZR86_RS01515at 330.205 kb on - strand, within ABZR86_RS01515at 330.317 kb on + strandat 330.449 kb on + strandat 330.449 kb on + strandat 330.449 kb on + strandat 330.450 kb on - strandat 330.450 kb on - strandat 330.450 kb on - strandat 330.450 kb on - strandat 330.450 kb on - strandat 330.522 kb on + strandat 330.522 kb on + strandat 330.522 kb on + strandat 330.523 kb on - strandat 330.679 kb on + strandat 330.679 kb on + strandat 330.679 kb on + strandat 330.726 kb on - strandat 330.798 kb on + strandat 330.798 kb on + strandat 330.798 kb on + strandat 330.799 kb on - strandat 330.823 kb on - strandat 330.823 kb on - strandat 330.823 kb on - strandat 330.836 kb on + strandat 330.885 kb on - strandat 330.916 kb on + strandat 330.916 kb on + strandat 330.916 kb on + strandat 330.917 kb on - strandat 330.917 kb on - strandat 330.917 kb on - strandat 330.917 kb on - strandat 330.945 kb on - strandat 330.971 kb on + strandat 330.971 kb on + strandat 330.972 kb on - strandat 331.165 kb on - strandat 331.367 kb on + strand, within ABZR86_RS01520at 331.368 kb on - strand, within ABZR86_RS01520at 331.368 kb on - strand, within ABZR86_RS01520at 331.433 kb on + strand, within ABZR86_RS01520at 331.433 kb on + strand, within ABZR86_RS01520at 331.433 kb on + strand, within ABZR86_RS01520at 331.433 kb on + strand, within ABZR86_RS01520at 331.434 kb on - strand, within ABZR86_RS01520at 331.434 kb on - strand, within ABZR86_RS01520at 331.514 kb on + strand, within ABZR86_RS01520at 331.515 kb on - strand, within ABZR86_RS01520at 331.690 kb on + strand, within ABZR86_RS01520at 331.703 kb on + strand, within ABZR86_RS01520at 331.704 kb on - strand, within ABZR86_RS01520at 331.704 kb on - strand, within ABZR86_RS01520at 331.706 kb on + strand, within ABZR86_RS01520at 331.707 kb on - strand, within ABZR86_RS01520at 331.728 kb on - strand, within ABZR86_RS01520at 331.862 kb on + strand, within ABZR86_RS01520at 331.865 kb on + strand, within ABZR86_RS01520at 331.865 kb on + strand, within ABZR86_RS01520at 331.866 kb on - strand, within ABZR86_RS01520at 331.866 kb on - strand, within ABZR86_RS01520at 331.866 kb on - strand, within ABZR86_RS01520at 331.866 kb on - strand, within ABZR86_RS01520at 332.000 kb on + strand, within ABZR86_RS01520at 332.000 kb on + strand, within ABZR86_RS01520at 332.243 kb on + strand, within ABZR86_RS01520at 332.244 kb on - strand, within ABZR86_RS01520at 332.261 kb on + strand, within ABZR86_RS01520at 332.262 kb on - strand, within ABZR86_RS01520at 332.682 kb on + strandat 332.978 kb on - strand, within ABZR86_RS01525at 333.594 kb on - strand, within ABZR86_RS01525

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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330,128 + ABZR86_RS01515 0.74 +0.3
330,129 - ABZR86_RS01515 0.75 -2.1
330,205 - ABZR86_RS01515 0.82 -0.1
330,205 - ABZR86_RS01515 0.82 +0.4
330,317 + -0.0
330,449 + +0.6
330,449 + +0.1
330,449 + +0.9
330,450 - +0.3
330,450 - -0.1
330,450 - -0.3
330,450 - -1.1
330,450 - +0.7
330,522 + -1.5
330,522 + -0.4
330,522 + +0.1
330,523 - -0.8
330,679 + +0.2
330,679 + -0.6
330,679 + +0.5
330,726 - +0.8
330,798 + -0.7
330,798 + -0.8
330,798 + +0.2
330,799 - +0.3
330,823 - +0.8
330,823 - +0.4
330,823 - -0.3
330,836 + -0.2
330,885 - -0.2
330,916 + -0.0
330,916 + +0.2
330,916 + -0.9
330,917 - -0.0
330,917 - -0.3
330,917 - +0.6
330,917 - +0.7
330,945 - +0.7
330,971 + -0.5
330,971 + -0.0
330,972 - -0.0
331,165 - -0.7
331,367 + ABZR86_RS01520 0.17 -0.2
331,368 - ABZR86_RS01520 0.17 +1.7
331,368 - ABZR86_RS01520 0.17 -0.3
331,433 + ABZR86_RS01520 0.21 -0.7
331,433 + ABZR86_RS01520 0.21 +0.3
331,433 + ABZR86_RS01520 0.21 -0.2
331,433 + ABZR86_RS01520 0.21 -0.2
331,434 - ABZR86_RS01520 0.21 +0.2
331,434 - ABZR86_RS01520 0.21 +0.3
331,514 + ABZR86_RS01520 0.27 -0.6
331,515 - ABZR86_RS01520 0.27 +0.1
331,690 + ABZR86_RS01520 0.38 +0.4
331,703 + ABZR86_RS01520 0.39 -0.6
331,704 - ABZR86_RS01520 0.39 -0.9
331,704 - ABZR86_RS01520 0.39 +0.3
331,706 + ABZR86_RS01520 0.39 +0.6
331,707 - ABZR86_RS01520 0.39 +0.1
331,728 - ABZR86_RS01520 0.41 -0.5
331,862 + ABZR86_RS01520 0.50 +1.4
331,865 + ABZR86_RS01520 0.50 -0.5
331,865 + ABZR86_RS01520 0.50 -0.9
331,866 - ABZR86_RS01520 0.50 +0.3
331,866 - ABZR86_RS01520 0.50 -0.6
331,866 - ABZR86_RS01520 0.50 +0.4
331,866 - ABZR86_RS01520 0.50 +0.4
332,000 + ABZR86_RS01520 0.59 -0.5
332,000 + ABZR86_RS01520 0.59 -0.7
332,243 + ABZR86_RS01520 0.75 -0.2
332,244 - ABZR86_RS01520 0.75 -0.3
332,261 + ABZR86_RS01520 0.76 -0.2
332,262 - ABZR86_RS01520 0.76 +0.3
332,682 + +0.3
332,978 - ABZR86_RS01525 0.13 +0.9
333,594 - ABZR86_RS01525 0.57 -0.5

Or see this region's nucleotide sequence