Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01180 and ABZR86_RS01185 are separated by 41 nucleotides ABZR86_RS01185 and ABZR86_RS01190 are separated by 208 nucleotides
ABZR86_RS01180: ABZR86_RS01180 - ESPR-type extended signal peptide-containing protein, at 237,924 to 244,532
_RS01180
ABZR86_RS01185: ABZR86_RS01185 - OmpA family protein, at 244,574 to 245,395
_RS01185
ABZR86_RS01190: ABZR86_RS01190 - alginate lyase family protein, at 245,604 to 246,806
_RS01190
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1 at 243.738 kb on + strand, within ABZR86_RS01180 at 243.739 kb on - strand, within ABZR86_RS01180 at 243.739 kb on - strand, within ABZR86_RS01180 at 243.755 kb on + strand, within ABZR86_RS01180 at 243.755 kb on + strand, within ABZR86_RS01180 at 243.756 kb on - strand, within ABZR86_RS01180 at 243.870 kb on + strand, within ABZR86_RS01180 at 243.900 kb on + strand at 243.901 kb on - strand at 243.901 kb on - strand at 243.981 kb on + strand at 243.981 kb on + strand at 243.981 kb on + strand at 244.249 kb on - strand at 244.357 kb on - strand at 244.357 kb on - strand at 244.357 kb on - strand at 244.357 kb on - strand at 244.455 kb on + strand at 244.579 kb on + strand at 244.851 kb on - strand, within ABZR86_RS01185 at 244.851 kb on - strand, within ABZR86_RS01185 at 244.943 kb on + strand, within ABZR86_RS01185 at 244.944 kb on - strand, within ABZR86_RS01185 at 245.192 kb on + strand, within ABZR86_RS01185 at 245.192 kb on + strand, within ABZR86_RS01185 at 245.193 kb on - strand, within ABZR86_RS01185 at 245.193 kb on - strand, within ABZR86_RS01185 at 245.394 kb on - strand at 245.467 kb on - strand at 245.467 kb on - strand at 245.904 kb on + strand, within ABZR86_RS01190 at 245.904 kb on + strand, within ABZR86_RS01190 at 245.904 kb on + strand, within ABZR86_RS01190 at 246.072 kb on + strand, within ABZR86_RS01190 at 246.072 kb on + strand, within ABZR86_RS01190 at 246.072 kb on + strand, within ABZR86_RS01190 at 246.073 kb on - strand, within ABZR86_RS01190 at 246.174 kb on + strand, within ABZR86_RS01190 at 246.174 kb on + strand, within ABZR86_RS01190 at 246.228 kb on + strand, within ABZR86_RS01190 at 246.229 kb on - strand, within ABZR86_RS01190 at 246.254 kb on + strand, within ABZR86_RS01190 at 246.255 kb on - strand, within ABZR86_RS01190 at 246.303 kb on + strand, within ABZR86_RS01190 at 246.321 kb on + strand, within ABZR86_RS01190 at 246.321 kb on + strand, within ABZR86_RS01190
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 243,738 + ABZR86_RS01180 0.88 +0.2 243,739 - ABZR86_RS01180 0.88 +0.2 243,739 - ABZR86_RS01180 0.88 -0.4 243,755 + ABZR86_RS01180 0.88 +0.6 243,755 + ABZR86_RS01180 0.88 +0.8 243,756 - ABZR86_RS01180 0.88 +0.1 243,870 + ABZR86_RS01180 0.90 -0.4 243,900 + -0.1 243,901 - -0.4 243,901 - +0.1 243,981 + +0.4 243,981 + -0.3 243,981 + +0.6 244,249 - +0.4 244,357 - +0.3 244,357 - +0.4 244,357 - -0.0 244,357 - -0.0 244,455 + -0.3 244,579 + +0.2 244,851 - ABZR86_RS01185 0.34 -0.2 244,851 - ABZR86_RS01185 0.34 -1.0 244,943 + ABZR86_RS01185 0.45 -0.6 244,944 - ABZR86_RS01185 0.45 +0.1 245,192 + ABZR86_RS01185 0.75 -0.8 245,192 + ABZR86_RS01185 0.75 +0.7 245,193 - ABZR86_RS01185 0.75 +0.2 245,193 - ABZR86_RS01185 0.75 +0.6 245,394 - -0.3 245,467 - +1.6 245,467 - -0.3 245,904 + ABZR86_RS01190 0.25 +0.3 245,904 + ABZR86_RS01190 0.25 +0.1 245,904 + ABZR86_RS01190 0.25 -0.1 246,072 + ABZR86_RS01190 0.39 +0.6 246,072 + ABZR86_RS01190 0.39 +0.3 246,072 + ABZR86_RS01190 0.39 +0.2 246,073 - ABZR86_RS01190 0.39 +0.3 246,174 + ABZR86_RS01190 0.47 -0.3 246,174 + ABZR86_RS01190 0.47 -0.1 246,228 + ABZR86_RS01190 0.52 -0.1 246,229 - ABZR86_RS01190 0.52 +0.2 246,254 + ABZR86_RS01190 0.54 -0.9 246,255 - ABZR86_RS01190 0.54 -0.9 246,303 + ABZR86_RS01190 0.58 +0.6 246,321 + ABZR86_RS01190 0.60 -0.5 246,321 + ABZR86_RS01190 0.60 +0.2
Or see this region's nucleotide sequence