Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01140 and ABZR86_RS01145 are separated by 102 nucleotides ABZR86_RS01145 and ABZR86_RS01150 are separated by 12 nucleotides
ABZR86_RS01140: ABZR86_RS01140 - DMT family transporter, at 229,160 to 230,062
_RS01140
ABZR86_RS01145: ABZR86_RS01145 - PLP-dependent aminotransferase family protein, at 230,165 to 231,571
_RS01145
ABZR86_RS01150: ABZR86_RS01150 - hypothetical protein, at 231,584 to 231,868
_RS01150
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.233 kb on - strand at 229.269 kb on + strand, within ABZR86_RS01140 at 229.270 kb on - strand, within ABZR86_RS01140 at 229.270 kb on - strand, within ABZR86_RS01140 at 229.278 kb on + strand, within ABZR86_RS01140 at 229.278 kb on + strand, within ABZR86_RS01140 at 229.279 kb on - strand, within ABZR86_RS01140 at 229.359 kb on + strand, within ABZR86_RS01140 at 229.360 kb on - strand, within ABZR86_RS01140 at 229.360 kb on - strand, within ABZR86_RS01140 at 229.371 kb on + strand, within ABZR86_RS01140 at 229.371 kb on + strand, within ABZR86_RS01140 at 229.372 kb on - strand, within ABZR86_RS01140 at 229.372 kb on - strand, within ABZR86_RS01140 at 229.593 kb on + strand, within ABZR86_RS01140 at 229.593 kb on + strand, within ABZR86_RS01140 at 229.594 kb on - strand, within ABZR86_RS01140 at 229.601 kb on - strand, within ABZR86_RS01140 at 229.746 kb on + strand, within ABZR86_RS01140 at 229.746 kb on + strand, within ABZR86_RS01140 at 229.933 kb on - strand, within ABZR86_RS01140 at 229.933 kb on - strand, within ABZR86_RS01140 at 230.096 kb on - strand at 230.140 kb on - strand at 230.174 kb on + strand at 230.358 kb on - strand, within ABZR86_RS01145 at 230.358 kb on - strand, within ABZR86_RS01145 at 230.358 kb on - strand, within ABZR86_RS01145 at 230.475 kb on + strand, within ABZR86_RS01145 at 230.475 kb on + strand, within ABZR86_RS01145 at 230.476 kb on - strand, within ABZR86_RS01145 at 230.762 kb on + strand, within ABZR86_RS01145 at 230.805 kb on + strand, within ABZR86_RS01145 at 230.880 kb on + strand, within ABZR86_RS01145 at 230.881 kb on - strand, within ABZR86_RS01145 at 231.222 kb on - strand, within ABZR86_RS01145 at 231.329 kb on - strand, within ABZR86_RS01145 at 231.471 kb on - strand at 231.585 kb on + strand at 231.586 kb on - strand at 231.810 kb on + strand, within ABZR86_RS01150 at 232.033 kb on + strand at 232.034 kb on - strand at 232.034 kb on - strand at 232.527 kb on + strand at 232.527 kb on + strand at 232.528 kb on - strand at 232.528 kb on - strand at 232.528 kb on - strand at 232.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 229,233 - -0.1 229,269 + ABZR86_RS01140 0.12 -0.3 229,270 - ABZR86_RS01140 0.12 -0.2 229,270 - ABZR86_RS01140 0.12 -0.5 229,278 + ABZR86_RS01140 0.13 -0.0 229,278 + ABZR86_RS01140 0.13 +0.0 229,279 - ABZR86_RS01140 0.13 -0.1 229,359 + ABZR86_RS01140 0.22 -0.4 229,360 - ABZR86_RS01140 0.22 +1.9 229,360 - ABZR86_RS01140 0.22 +1.7 229,371 + ABZR86_RS01140 0.23 +0.4 229,371 + ABZR86_RS01140 0.23 +0.4 229,372 - ABZR86_RS01140 0.23 +0.8 229,372 - ABZR86_RS01140 0.23 +0.6 229,593 + ABZR86_RS01140 0.48 -0.1 229,593 + ABZR86_RS01140 0.48 -0.6 229,594 - ABZR86_RS01140 0.48 -0.4 229,601 - ABZR86_RS01140 0.49 -0.1 229,746 + ABZR86_RS01140 0.65 -0.0 229,746 + ABZR86_RS01140 0.65 -2.1 229,933 - ABZR86_RS01140 0.86 +0.7 229,933 - ABZR86_RS01140 0.86 -0.1 230,096 - +0.4 230,140 - +0.4 230,174 + -0.4 230,358 - ABZR86_RS01145 0.14 +0.6 230,358 - ABZR86_RS01145 0.14 -0.1 230,358 - ABZR86_RS01145 0.14 +0.0 230,475 + ABZR86_RS01145 0.22 +0.7 230,475 + ABZR86_RS01145 0.22 +0.5 230,476 - ABZR86_RS01145 0.22 +0.2 230,762 + ABZR86_RS01145 0.42 -0.5 230,805 + ABZR86_RS01145 0.45 +0.4 230,880 + ABZR86_RS01145 0.51 +1.6 230,881 - ABZR86_RS01145 0.51 -0.7 231,222 - ABZR86_RS01145 0.75 -1.1 231,329 - ABZR86_RS01145 0.83 +0.0 231,471 - +0.4 231,585 + +0.4 231,586 - -0.2 231,810 + ABZR86_RS01150 0.79 -1.5 232,033 + +0.3 232,034 - -0.4 232,034 - -0.8 232,527 + +0.2 232,527 + -0.0 232,528 - -0.2 232,528 - +0.0 232,528 - +0.3 232,528 - -0.2
Or see this region's nucleotide sequence