Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00430 and ABZR86_RS00435 are separated by 136 nucleotides ABZR86_RS00435 and ABZR86_RS00440 are separated by 103 nucleotides ABZR86_RS00440 and ABZR86_RS00445 are separated by 103 nucleotides
ABZR86_RS00430: ABZR86_RS00430 - PhzF family phenazine biosynthesis protein, at 82,183 to 83,082
_RS00430
ABZR86_RS00435: ABZR86_RS00435 - rhomboid family intramembrane serine protease, at 83,219 to 83,824
_RS00435
ABZR86_RS00440: ABZR86_RS00440 - hypothetical protein, at 83,928 to 84,305
_RS00440
ABZR86_RS00445: ABZR86_RS00445 - aminopeptidase, at 84,409 to 85,437
_RS00445
Position (kb) 83
84 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 82.314 kb on + strand, within ABZR86_RS00430 at 82.314 kb on + strand, within ABZR86_RS00430 at 82.315 kb on - strand, within ABZR86_RS00430 at 82.315 kb on - strand, within ABZR86_RS00430 at 82.315 kb on - strand, within ABZR86_RS00430 at 82.316 kb on + strand, within ABZR86_RS00430 at 82.356 kb on + strand, within ABZR86_RS00430 at 82.357 kb on - strand, within ABZR86_RS00430 at 82.358 kb on + strand, within ABZR86_RS00430 at 82.359 kb on - strand, within ABZR86_RS00430 at 82.359 kb on - strand, within ABZR86_RS00430 at 82.359 kb on - strand, within ABZR86_RS00430 at 82.445 kb on + strand, within ABZR86_RS00430 at 82.613 kb on + strand, within ABZR86_RS00430 at 82.613 kb on + strand, within ABZR86_RS00430 at 82.614 kb on - strand, within ABZR86_RS00430 at 82.633 kb on + strand, within ABZR86_RS00430 at 82.720 kb on + strand, within ABZR86_RS00430 at 82.720 kb on + strand, within ABZR86_RS00430 at 82.720 kb on + strand, within ABZR86_RS00430 at 82.720 kb on + strand, within ABZR86_RS00430 at 82.721 kb on - strand, within ABZR86_RS00430 at 82.721 kb on - strand, within ABZR86_RS00430 at 82.721 kb on - strand, within ABZR86_RS00430 at 82.721 kb on - strand, within ABZR86_RS00430 at 82.844 kb on - strand, within ABZR86_RS00430 at 82.844 kb on - strand, within ABZR86_RS00430 at 82.902 kb on - strand, within ABZR86_RS00430 at 82.902 kb on - strand, within ABZR86_RS00430 at 83.116 kb on - strand at 83.128 kb on + strand at 83.128 kb on + strand at 83.128 kb on + strand at 83.129 kb on - strand at 83.129 kb on - strand at 83.129 kb on - strand at 83.216 kb on + strand at 83.217 kb on - strand at 83.217 kb on - strand at 83.217 kb on - strand at 83.217 kb on - strand at 83.217 kb on - strand at 83.217 kb on - strand at 83.217 kb on - strand at 83.217 kb on - strand at 83.340 kb on - strand, within ABZR86_RS00435 at 83.340 kb on - strand, within ABZR86_RS00435 at 83.357 kb on + strand, within ABZR86_RS00435 at 83.357 kb on + strand, within ABZR86_RS00435 at 83.381 kb on + strand, within ABZR86_RS00435 at 83.381 kb on + strand, within ABZR86_RS00435 at 83.381 kb on + strand, within ABZR86_RS00435 at 83.381 kb on + strand, within ABZR86_RS00435 at 83.381 kb on + strand, within ABZR86_RS00435 at 83.382 kb on - strand, within ABZR86_RS00435 at 83.382 kb on - strand, within ABZR86_RS00435 at 83.382 kb on - strand, within ABZR86_RS00435 at 83.382 kb on - strand, within ABZR86_RS00435 at 83.441 kb on + strand, within ABZR86_RS00435 at 83.442 kb on - strand, within ABZR86_RS00435 at 83.480 kb on + strand, within ABZR86_RS00435 at 83.654 kb on + strand, within ABZR86_RS00435 at 83.654 kb on + strand, within ABZR86_RS00435 at 83.655 kb on - strand, within ABZR86_RS00435 at 83.666 kb on + strand, within ABZR86_RS00435 at 83.666 kb on + strand, within ABZR86_RS00435 at 83.666 kb on + strand, within ABZR86_RS00435 at 83.745 kb on - strand, within ABZR86_RS00435 at 83.745 kb on - strand, within ABZR86_RS00435 at 83.897 kb on - strand at 83.988 kb on + strand, within ABZR86_RS00440 at 83.988 kb on + strand, within ABZR86_RS00440 at 83.988 kb on + strand, within ABZR86_RS00440 at 83.989 kb on - strand, within ABZR86_RS00440 at 83.991 kb on + strand, within ABZR86_RS00440 at 83.992 kb on - strand, within ABZR86_RS00440 at 83.992 kb on - strand, within ABZR86_RS00440 at 84.004 kb on - strand, within ABZR86_RS00440 at 84.009 kb on + strand, within ABZR86_RS00440 at 84.009 kb on + strand, within ABZR86_RS00440 at 84.009 kb on + strand, within ABZR86_RS00440 at 84.009 kb on + strand, within ABZR86_RS00440 at 84.010 kb on - strand, within ABZR86_RS00440 at 84.010 kb on - strand, within ABZR86_RS00440 at 84.027 kb on + strand, within ABZR86_RS00440 at 84.028 kb on - strand, within ABZR86_RS00440 at 84.042 kb on + strand, within ABZR86_RS00440 at 84.043 kb on - strand, within ABZR86_RS00440 at 84.069 kb on + strand, within ABZR86_RS00440 at 84.069 kb on + strand, within ABZR86_RS00440 at 84.070 kb on - strand, within ABZR86_RS00440 at 84.081 kb on + strand, within ABZR86_RS00440 at 84.081 kb on + strand, within ABZR86_RS00440 at 84.082 kb on - strand, within ABZR86_RS00440 at 84.084 kb on + strand, within ABZR86_RS00440 at 84.096 kb on + strand, within ABZR86_RS00440 at 84.097 kb on - strand, within ABZR86_RS00440 at 84.097 kb on - strand, within ABZR86_RS00440 at 84.097 kb on - strand, within ABZR86_RS00440 at 84.100 kb on - strand, within ABZR86_RS00440 at 84.100 kb on - strand, within ABZR86_RS00440 at 84.111 kb on + strand, within ABZR86_RS00440 at 84.114 kb on + strand, within ABZR86_RS00440 at 84.114 kb on + strand, within ABZR86_RS00440 at 84.114 kb on + strand, within ABZR86_RS00440 at 84.115 kb on - strand, within ABZR86_RS00440 at 84.115 kb on - strand, within ABZR86_RS00440 at 84.126 kb on + strand, within ABZR86_RS00440 at 84.165 kb on + strand, within ABZR86_RS00440 at 84.166 kb on - strand, within ABZR86_RS00440 at 84.208 kb on - strand, within ABZR86_RS00440 at 84.208 kb on - strand, within ABZR86_RS00440 at 84.445 kb on + strand at 84.446 kb on - strand at 84.446 kb on - strand at 84.446 kb on - strand at 84.448 kb on + strand at 84.448 kb on + strand at 84.448 kb on + strand at 84.448 kb on + strand at 84.449 kb on - strand at 84.449 kb on - strand at 84.449 kb on - strand at 84.625 kb on + strand, within ABZR86_RS00445 at 84.625 kb on + strand, within ABZR86_RS00445 at 84.625 kb on + strand, within ABZR86_RS00445 at 84.626 kb on - strand, within ABZR86_RS00445 at 84.626 kb on - strand, within ABZR86_RS00445 at 84.647 kb on - strand, within ABZR86_RS00445 at 84.647 kb on - strand, within ABZR86_RS00445 at 84.679 kb on + strand, within ABZR86_RS00445 at 84.730 kb on + strand, within ABZR86_RS00445 at 84.739 kb on + strand, within ABZR86_RS00445 at 84.802 kb on + strand, within ABZR86_RS00445 at 84.802 kb on + strand, within ABZR86_RS00445 at 84.802 kb on + strand, within ABZR86_RS00445 at 84.802 kb on + strand, within ABZR86_RS00445 at 84.802 kb on + strand, within ABZR86_RS00445 at 84.803 kb on - strand, within ABZR86_RS00445 at 84.803 kb on - strand, within ABZR86_RS00445 at 84.823 kb on + strand, within ABZR86_RS00445 at 84.823 kb on + strand, within ABZR86_RS00445
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 82,314 + ABZR86_RS00430 0.15 +0.8 82,314 + ABZR86_RS00430 0.15 -1.0 82,315 - ABZR86_RS00430 0.15 -0.2 82,315 - ABZR86_RS00430 0.15 -0.5 82,315 - ABZR86_RS00430 0.15 +0.6 82,316 + ABZR86_RS00430 0.15 +0.0 82,356 + ABZR86_RS00430 0.19 +0.3 82,357 - ABZR86_RS00430 0.19 +0.5 82,358 + ABZR86_RS00430 0.19 +0.5 82,359 - ABZR86_RS00430 0.20 +0.3 82,359 - ABZR86_RS00430 0.20 -0.2 82,359 - ABZR86_RS00430 0.20 +0.4 82,445 + ABZR86_RS00430 0.29 +0.0 82,613 + ABZR86_RS00430 0.48 +0.1 82,613 + ABZR86_RS00430 0.48 +0.4 82,614 - ABZR86_RS00430 0.48 -0.2 82,633 + ABZR86_RS00430 0.50 -0.2 82,720 + ABZR86_RS00430 0.60 -0.0 82,720 + ABZR86_RS00430 0.60 -0.3 82,720 + ABZR86_RS00430 0.60 +0.2 82,720 + ABZR86_RS00430 0.60 -0.7 82,721 - ABZR86_RS00430 0.60 -0.0 82,721 - ABZR86_RS00430 0.60 +1.1 82,721 - ABZR86_RS00430 0.60 +1.4 82,721 - ABZR86_RS00430 0.60 +1.1 82,844 - ABZR86_RS00430 0.73 -0.0 82,844 - ABZR86_RS00430 0.73 -0.0 82,902 - ABZR86_RS00430 0.80 -0.0 82,902 - ABZR86_RS00430 0.80 +0.6 83,116 - -0.5 83,128 + -0.1 83,128 + -0.5 83,128 + -0.3 83,129 - +0.1 83,129 - +0.3 83,129 - +0.4 83,216 + -1.3 83,217 - -1.6 83,217 - -1.6 83,217 - -3.1 83,217 - -2.1 83,217 - -2.3 83,217 - -2.2 83,217 - -2.8 83,217 - -1.7 83,340 - ABZR86_RS00435 0.20 -3.2 83,340 - ABZR86_RS00435 0.20 -4.1 83,357 + ABZR86_RS00435 0.23 -3.8 83,357 + ABZR86_RS00435 0.23 -3.0 83,381 + ABZR86_RS00435 0.27 -3.2 83,381 + ABZR86_RS00435 0.27 -4.1 83,381 + ABZR86_RS00435 0.27 -3.3 83,381 + ABZR86_RS00435 0.27 -2.1 83,381 + ABZR86_RS00435 0.27 -2.3 83,382 - ABZR86_RS00435 0.27 -2.1 83,382 - ABZR86_RS00435 0.27 -3.9 83,382 - ABZR86_RS00435 0.27 -1.1 83,382 - ABZR86_RS00435 0.27 -2.7 83,441 + ABZR86_RS00435 0.37 -0.5 83,442 - ABZR86_RS00435 0.37 -2.1 83,480 + ABZR86_RS00435 0.43 -0.5 83,654 + ABZR86_RS00435 0.72 -0.3 83,654 + ABZR86_RS00435 0.72 -1.6 83,655 - ABZR86_RS00435 0.72 -1.3 83,666 + ABZR86_RS00435 0.74 -1.1 83,666 + ABZR86_RS00435 0.74 +1.0 83,666 + ABZR86_RS00435 0.74 -2.0 83,745 - ABZR86_RS00435 0.87 -1.8 83,745 - ABZR86_RS00435 0.87 -1.8 83,897 - +1.9 83,988 + ABZR86_RS00440 0.16 -0.0 83,988 + ABZR86_RS00440 0.16 +0.3 83,988 + ABZR86_RS00440 0.16 +0.6 83,989 - ABZR86_RS00440 0.16 -0.3 83,991 + ABZR86_RS00440 0.17 -0.3 83,992 - ABZR86_RS00440 0.17 -0.9 83,992 - ABZR86_RS00440 0.17 +0.2 84,004 - ABZR86_RS00440 0.20 -0.6 84,009 + ABZR86_RS00440 0.21 +0.3 84,009 + ABZR86_RS00440 0.21 +0.2 84,009 + ABZR86_RS00440 0.21 +0.5 84,009 + ABZR86_RS00440 0.21 -0.0 84,010 - ABZR86_RS00440 0.22 +0.5 84,010 - ABZR86_RS00440 0.22 +0.2 84,027 + ABZR86_RS00440 0.26 +0.8 84,028 - ABZR86_RS00440 0.26 +0.6 84,042 + ABZR86_RS00440 0.30 +0.7 84,043 - ABZR86_RS00440 0.30 -0.1 84,069 + ABZR86_RS00440 0.37 +0.4 84,069 + ABZR86_RS00440 0.37 -0.2 84,070 - ABZR86_RS00440 0.38 +0.2 84,081 + ABZR86_RS00440 0.40 +0.7 84,081 + ABZR86_RS00440 0.40 +0.1 84,082 - ABZR86_RS00440 0.41 -1.8 84,084 + ABZR86_RS00440 0.41 +0.0 84,096 + ABZR86_RS00440 0.44 +1.0 84,097 - ABZR86_RS00440 0.45 -1.0 84,097 - ABZR86_RS00440 0.45 -0.7 84,097 - ABZR86_RS00440 0.45 +0.3 84,100 - ABZR86_RS00440 0.46 -0.4 84,100 - ABZR86_RS00440 0.46 +0.9 84,111 + ABZR86_RS00440 0.48 +0.3 84,114 + ABZR86_RS00440 0.49 +0.2 84,114 + ABZR86_RS00440 0.49 -1.1 84,114 + ABZR86_RS00440 0.49 -0.6 84,115 - ABZR86_RS00440 0.49 -0.2 84,115 - ABZR86_RS00440 0.49 +0.1 84,126 + ABZR86_RS00440 0.52 +0.4 84,165 + ABZR86_RS00440 0.63 +0.3 84,166 - ABZR86_RS00440 0.63 +0.1 84,208 - ABZR86_RS00440 0.74 -0.0 84,208 - ABZR86_RS00440 0.74 -0.6 84,445 + -0.3 84,446 - +0.4 84,446 - -0.1 84,446 - -1.5 84,448 + +0.6 84,448 + +0.0 84,448 + -0.7 84,448 + +0.1 84,449 - -0.4 84,449 - +0.5 84,449 - +0.4 84,625 + ABZR86_RS00445 0.21 +0.4 84,625 + ABZR86_RS00445 0.21 +0.1 84,625 + ABZR86_RS00445 0.21 +0.2 84,626 - ABZR86_RS00445 0.21 +0.3 84,626 - ABZR86_RS00445 0.21 +1.1 84,647 - ABZR86_RS00445 0.23 -1.6 84,647 - ABZR86_RS00445 0.23 +1.7 84,679 + ABZR86_RS00445 0.26 -0.1 84,730 + ABZR86_RS00445 0.31 -0.9 84,739 + ABZR86_RS00445 0.32 +0.5 84,802 + ABZR86_RS00445 0.38 -0.2 84,802 + ABZR86_RS00445 0.38 +0.4 84,802 + ABZR86_RS00445 0.38 +0.2 84,802 + ABZR86_RS00445 0.38 +0.7 84,802 + ABZR86_RS00445 0.38 +1.9 84,803 - ABZR86_RS00445 0.38 -0.1 84,803 - ABZR86_RS00445 0.38 -0.2 84,823 + ABZR86_RS00445 0.40 -0.1 84,823 + ABZR86_RS00445 0.40 +0.7
Or see this region's nucleotide sequence