Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00265

Experiment: Sisomicin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00260 and ABZR86_RS00265 are separated by 142 nucleotidesABZR86_RS00265 and ABZR86_RS00270 are separated by 95 nucleotides ABZR86_RS00260: ABZR86_RS00260 - DUF72 domain-containing protein, at 46,258 to 47,088 _RS00260 ABZR86_RS00265: ABZR86_RS00265 - PD40 domain-containing protein, at 47,231 to 48,214 _RS00265 ABZR86_RS00270: ABZR86_RS00270 - serine hydrolase, at 48,310 to 49,953 _RS00270 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.332 kb on - strandat 46.499 kb on + strand, within ABZR86_RS00260at 46.500 kb on - strand, within ABZR86_RS00260at 46.552 kb on - strand, within ABZR86_RS00260at 46.553 kb on + strand, within ABZR86_RS00260at 46.554 kb on - strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.830 kb on - strand, within ABZR86_RS00260at 46.889 kb on + strand, within ABZR86_RS00260at 46.916 kb on + strand, within ABZR86_RS00260at 46.916 kb on + strand, within ABZR86_RS00260at 46.916 kb on + strand, within ABZR86_RS00260at 46.917 kb on - strand, within ABZR86_RS00260at 46.917 kb on - strand, within ABZR86_RS00260at 46.917 kb on - strand, within ABZR86_RS00260at 46.958 kb on + strand, within ABZR86_RS00260at 46.959 kb on - strand, within ABZR86_RS00260at 47.018 kb on + strandat 47.019 kb on - strandat 47.712 kb on - strand, within ABZR86_RS00265at 47.712 kb on - strand, within ABZR86_RS00265at 47.810 kb on + strand, within ABZR86_RS00265at 47.810 kb on + strand, within ABZR86_RS00265at 47.939 kb on + strand, within ABZR86_RS00265at 47.939 kb on + strand, within ABZR86_RS00265at 47.940 kb on - strand, within ABZR86_RS00265at 47.940 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.084 kb on - strand, within ABZR86_RS00265at 48.277 kb on + strandat 48.278 kb on - strandat 48.278 kb on - strandat 48.278 kb on - strandat 48.466 kb on + strandat 48.466 kb on + strandat 48.467 kb on - strandat 48.597 kb on + strand, within ABZR86_RS00270at 48.597 kb on + strand, within ABZR86_RS00270at 48.597 kb on + strand, within ABZR86_RS00270at 48.598 kb on - strand, within ABZR86_RS00270at 48.598 kb on - strand, within ABZR86_RS00270at 48.598 kb on - strand, within ABZR86_RS00270at 48.598 kb on - strand, within ABZR86_RS00270at 48.730 kb on + strand, within ABZR86_RS00270at 48.730 kb on + strand, within ABZR86_RS00270at 48.731 kb on - strand, within ABZR86_RS00270at 48.731 kb on - strand, within ABZR86_RS00270at 48.731 kb on - strand, within ABZR86_RS00270at 48.809 kb on - strand, within ABZR86_RS00270at 48.826 kb on + strand, within ABZR86_RS00270at 48.826 kb on + strand, within ABZR86_RS00270at 48.827 kb on - strand, within ABZR86_RS00270at 48.827 kb on - strand, within ABZR86_RS00270at 48.893 kb on - strand, within ABZR86_RS00270at 48.893 kb on - strand, within ABZR86_RS00270at 48.959 kb on - strand, within ABZR86_RS00270at 48.959 kb on - strand, within ABZR86_RS00270at 49.028 kb on - strand, within ABZR86_RS00270at 49.028 kb on - strand, within ABZR86_RS00270at 49.028 kb on - strand, within ABZR86_RS00270at 49.138 kb on + strand, within ABZR86_RS00270at 49.138 kb on + strand, within ABZR86_RS00270at 49.139 kb on - strand, within ABZR86_RS00270

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml
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46,332 - +0.3
46,499 + ABZR86_RS00260 0.29 -1.2
46,500 - ABZR86_RS00260 0.29 -0.1
46,552 - ABZR86_RS00260 0.35 +0.3
46,553 + ABZR86_RS00260 0.35 +1.5
46,554 - ABZR86_RS00260 0.36 +0.7
46,592 + ABZR86_RS00260 0.40 +0.5
46,592 + ABZR86_RS00260 0.40 +0.4
46,592 + ABZR86_RS00260 0.40 -1.0
46,592 + ABZR86_RS00260 0.40 +0.1
46,592 + ABZR86_RS00260 0.40 -0.1
46,593 - ABZR86_RS00260 0.40 -0.4
46,593 - ABZR86_RS00260 0.40 -0.5
46,593 - ABZR86_RS00260 0.40 -0.9
46,593 - ABZR86_RS00260 0.40 -0.4
46,593 - ABZR86_RS00260 0.40 -0.3
46,830 - ABZR86_RS00260 0.69 +1.6
46,889 + ABZR86_RS00260 0.76 +0.7
46,916 + ABZR86_RS00260 0.79 +1.0
46,916 + ABZR86_RS00260 0.79 +0.5
46,916 + ABZR86_RS00260 0.79 +0.4
46,917 - ABZR86_RS00260 0.79 +0.7
46,917 - ABZR86_RS00260 0.79 +0.3
46,917 - ABZR86_RS00260 0.79 +0.3
46,958 + ABZR86_RS00260 0.84 +0.3
46,959 - ABZR86_RS00260 0.84 +0.5
47,018 + -0.2
47,019 - +0.6
47,712 - ABZR86_RS00265 0.49 +0.0
47,712 - ABZR86_RS00265 0.49 +0.8
47,810 + ABZR86_RS00265 0.59 +0.5
47,810 + ABZR86_RS00265 0.59 +0.3
47,939 + ABZR86_RS00265 0.72 +0.0
47,939 + ABZR86_RS00265 0.72 +0.2
47,940 - ABZR86_RS00265 0.72 +0.4
47,940 - ABZR86_RS00265 0.72 +0.4
48,051 - ABZR86_RS00265 0.83 +0.2
48,051 - ABZR86_RS00265 0.83 -0.4
48,051 - ABZR86_RS00265 0.83 -0.2
48,051 - ABZR86_RS00265 0.83 +0.5
48,084 - ABZR86_RS00265 0.87 -0.7
48,277 + -0.3
48,278 - -0.2
48,278 - -0.3
48,278 - -0.5
48,466 + +0.2
48,466 + +0.7
48,467 - +0.3
48,597 + ABZR86_RS00270 0.17 +0.4
48,597 + ABZR86_RS00270 0.17 +1.5
48,597 + ABZR86_RS00270 0.17 -0.0
48,598 - ABZR86_RS00270 0.18 -1.8
48,598 - ABZR86_RS00270 0.18 +0.2
48,598 - ABZR86_RS00270 0.18 +0.4
48,598 - ABZR86_RS00270 0.18 +0.4
48,730 + ABZR86_RS00270 0.26 -0.1
48,730 + ABZR86_RS00270 0.26 +0.8
48,731 - ABZR86_RS00270 0.26 -0.7
48,731 - ABZR86_RS00270 0.26 -0.1
48,731 - ABZR86_RS00270 0.26 -0.3
48,809 - ABZR86_RS00270 0.30 +0.2
48,826 + ABZR86_RS00270 0.31 +0.1
48,826 + ABZR86_RS00270 0.31 -0.2
48,827 - ABZR86_RS00270 0.31 -0.2
48,827 - ABZR86_RS00270 0.31 +0.3
48,893 - ABZR86_RS00270 0.35 -0.1
48,893 - ABZR86_RS00270 0.35 +1.5
48,959 - ABZR86_RS00270 0.39 +0.0
48,959 - ABZR86_RS00270 0.39 +0.6
49,028 - ABZR86_RS00270 0.44 +1.9
49,028 - ABZR86_RS00270 0.44 +0.5
49,028 - ABZR86_RS00270 0.44 +1.3
49,138 + ABZR86_RS00270 0.50 +0.1
49,138 + ABZR86_RS00270 0.50 +0.2
49,139 - ABZR86_RS00270 0.50 -0.4

Or see this region's nucleotide sequence