Experiment: Sisomicin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00195 and ABZR86_RS00200 are separated by 99 nucleotides ABZR86_RS00200 and ABZR86_RS00205 are separated by 111 nucleotides ABZR86_RS00205 and ABZR86_RS00210 are separated by 40 nucleotides ABZR86_RS00210 and ABZR86_RS00215 are separated by 124 nucleotides ABZR86_RS00215 and ABZR86_RS00220 are separated by 188 nucleotides
ABZR86_RS00195: ABZR86_RS00195 - zinc ribbon domain-containing protein YjdM, at 36,478 to 36,819
_RS00195
ABZR86_RS00200: ABZR86_RS00200 - hypothetical protein, at 36,919 to 37,287
_RS00200
ABZR86_RS00205: ABZR86_RS00205 - hypothetical protein, at 37,399 to 37,773
_RS00205
ABZR86_RS00210: ABZR86_RS00210 - VOC family protein, at 37,814 to 38,308
_RS00210
ABZR86_RS00215: ABZR86_RS00215 - biopolymer transporter ExbD, at 38,433 to 38,825
_RS00215
ABZR86_RS00220: ABZR86_RS00220 - DUF3014 domain-containing protein, at 39,014 to 39,889
_RS00220
Position (kb) 37
38
39 Strain fitness (log2 ratio) -1
0
1 at 37.771 kb on + strand at 37.771 kb on + strand at 37.772 kb on - strand at 37.772 kb on - strand at 37.956 kb on + strand, within ABZR86_RS00210 at 37.957 kb on - strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.231 kb on + strand, within ABZR86_RS00210 at 38.232 kb on - strand, within ABZR86_RS00210 at 38.232 kb on - strand, within ABZR86_RS00210 at 38.232 kb on - strand, within ABZR86_RS00210 at 38.232 kb on - strand, within ABZR86_RS00210 at 38.235 kb on + strand, within ABZR86_RS00210 at 38.235 kb on + strand, within ABZR86_RS00210 at 38.235 kb on + strand, within ABZR86_RS00210 at 38.235 kb on + strand, within ABZR86_RS00210 at 38.236 kb on - strand, within ABZR86_RS00210 at 38.236 kb on - strand, within ABZR86_RS00210 at 38.236 kb on - strand, within ABZR86_RS00210 at 38.236 kb on - strand, within ABZR86_RS00210 at 38.435 kb on - strand at 38.504 kb on - strand, within ABZR86_RS00215 at 38.905 kb on - strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.092 kb on + strand at 39.093 kb on - strand at 39.093 kb on - strand at 39.093 kb on - strand at 39.093 kb on - strand at 39.096 kb on + strand at 39.097 kb on - strand at 39.097 kb on - strand at 39.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.016 mg/ml remove 37,771 + +0.3 37,771 + +0.5 37,772 - +0.3 37,772 - +0.2 37,956 + ABZR86_RS00210 0.29 +0.7 37,957 - ABZR86_RS00210 0.29 +1.1 38,231 + ABZR86_RS00210 0.84 +0.2 38,231 + ABZR86_RS00210 0.84 +0.3 38,231 + ABZR86_RS00210 0.84 +0.8 38,231 + ABZR86_RS00210 0.84 +0.5 38,231 + ABZR86_RS00210 0.84 +0.2 38,232 - ABZR86_RS00210 0.84 -0.4 38,232 - ABZR86_RS00210 0.84 +0.2 38,232 - ABZR86_RS00210 0.84 -0.4 38,232 - ABZR86_RS00210 0.84 -0.2 38,235 + ABZR86_RS00210 0.85 -0.5 38,235 + ABZR86_RS00210 0.85 +0.1 38,235 + ABZR86_RS00210 0.85 -1.3 38,235 + ABZR86_RS00210 0.85 +0.2 38,236 - ABZR86_RS00210 0.85 +0.3 38,236 - ABZR86_RS00210 0.85 +0.2 38,236 - ABZR86_RS00210 0.85 -0.1 38,236 - ABZR86_RS00210 0.85 +0.5 38,435 - +0.6 38,504 - ABZR86_RS00215 0.18 +0.1 38,905 - +0.0 39,092 + +0.2 39,092 + +0.7 39,092 + +0.4 39,092 + -0.3 39,092 + +0.2 39,092 + +0.1 39,093 - +0.0 39,093 - -0.3 39,093 - +0.7 39,093 - +0.2 39,096 + +0.0 39,097 - -0.1 39,097 - +0.1 39,097 - -0.0
Or see this region's nucleotide sequence