Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_943

Experiment: Ceftazidime 0.15 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_941 and Pf6N2E2_942 are separated by 197 nucleotidesPf6N2E2_942 and Pf6N2E2_943 are separated by 213 nucleotidesPf6N2E2_943 and Pf6N2E2_944 are separated by 75 nucleotides Pf6N2E2_941 - Probable transmembrane protein, at 1,108,293 to 1,108,925 _941 Pf6N2E2_942 - Mll6465 protein, at 1,109,123 to 1,109,614 _942 Pf6N2E2_943 - Transcriptional regulator, AraC family, at 1,109,828 to 1,110,874 _943 Pf6N2E2_944 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 1,110,950 to 1,111,354 _944 Position (kb) 1109 1110 1111Strain fitness (log2 ratio) -1 0 1 2 3at 1108.888 kb on + strandat 1108.888 kb on + strandat 1108.888 kb on + strandat 1108.888 kb on + strandat 1108.888 kb on + strandat 1108.888 kb on + strandat 1108.889 kb on - strandat 1108.889 kb on - strandat 1108.941 kb on - strandat 1108.963 kb on - strandat 1109.046 kb on + strandat 1109.046 kb on + strandat 1109.046 kb on + strandat 1109.047 kb on - strandat 1109.059 kb on - strandat 1109.158 kb on + strandat 1109.159 kb on - strandat 1109.159 kb on - strandat 1109.164 kb on + strandat 1109.164 kb on + strandat 1109.538 kb on - strand, within Pf6N2E2_942at 1109.538 kb on - strand, within Pf6N2E2_942at 1109.628 kb on + strandat 1109.777 kb on + strandat 1109.777 kb on + strandat 1109.777 kb on + strandat 1109.778 kb on - strandat 1109.848 kb on + strandat 1109.848 kb on + strandat 1109.849 kb on - strandat 1109.943 kb on + strand, within Pf6N2E2_943at 1109.943 kb on + strand, within Pf6N2E2_943at 1109.944 kb on - strand, within Pf6N2E2_943at 1109.977 kb on - strand, within Pf6N2E2_943at 1110.011 kb on + strand, within Pf6N2E2_943at 1110.119 kb on - strand, within Pf6N2E2_943at 1110.126 kb on + strand, within Pf6N2E2_943at 1110.127 kb on - strand, within Pf6N2E2_943at 1110.473 kb on + strand, within Pf6N2E2_943at 1110.474 kb on - strand, within Pf6N2E2_943at 1110.742 kb on + strand, within Pf6N2E2_943at 1110.873 kb on - strandat 1110.891 kb on + strandat 1110.897 kb on + strandat 1111.039 kb on + strand, within Pf6N2E2_944at 1111.040 kb on - strand, within Pf6N2E2_944at 1111.041 kb on + strand, within Pf6N2E2_944at 1111.041 kb on + strand, within Pf6N2E2_944at 1111.042 kb on - strand, within Pf6N2E2_944at 1111.042 kb on - strand, within Pf6N2E2_944at 1111.047 kb on + strand, within Pf6N2E2_944at 1111.048 kb on - strand, within Pf6N2E2_944at 1111.048 kb on - strand, within Pf6N2E2_944at 1111.053 kb on + strandat 1111.053 kb on + strand, within Pf6N2E2_944at 1111.054 kb on - strand, within Pf6N2E2_944at 1111.054 kb on - strand, within Pf6N2E2_944at 1111.054 kb on - strand, within Pf6N2E2_944at 1111.054 kb on - strand, within Pf6N2E2_944at 1111.054 kb on - strand, within Pf6N2E2_944at 1111.054 kb on - strand, within Pf6N2E2_944at 1111.080 kb on + strand, within Pf6N2E2_944at 1111.081 kb on - strand, within Pf6N2E2_944at 1111.081 kb on - strand, within Pf6N2E2_944at 1111.081 kb on - strand, within Pf6N2E2_944at 1111.232 kb on + strand, within Pf6N2E2_944at 1111.244 kb on + strand, within Pf6N2E2_944at 1111.244 kb on + strand, within Pf6N2E2_944at 1111.245 kb on - strand, within Pf6N2E2_944at 1111.245 kb on - strand, within Pf6N2E2_944at 1111.462 kb on - strandat 1111.518 kb on - strandat 1111.518 kb on - strandat 1111.529 kb on - strandat 1111.529 kb on - strandat 1111.585 kb on - strandat 1111.585 kb on - strandat 1111.678 kb on - strandat 1111.764 kb on + strandat 1111.809 kb on + strandat 1111.809 kb on + strandat 1111.809 kb on + strandat 1111.809 kb on + strandat 1111.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.15 mg/ml
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1,108,888 + -0.4
1,108,888 + -0.6
1,108,888 + -0.2
1,108,888 + +1.0
1,108,888 + +0.6
1,108,888 + -0.4
1,108,889 - +0.7
1,108,889 - -0.3
1,108,941 - +0.1
1,108,963 - -0.1
1,109,046 + -1.2
1,109,046 + -1.1
1,109,046 + +2.4
1,109,047 - +0.1
1,109,059 - +0.7
1,109,158 + +0.2
1,109,159 - +0.1
1,109,159 - -0.1
1,109,164 + +0.4
1,109,164 + -0.3
1,109,538 - Pf6N2E2_942 0.84 -0.1
1,109,538 - Pf6N2E2_942 0.84 -0.3
1,109,628 + +0.4
1,109,777 + +0.4
1,109,777 + +0.6
1,109,777 + -1.2
1,109,778 - -0.2
1,109,848 + -0.9
1,109,848 + -0.4
1,109,849 - +1.1
1,109,943 + Pf6N2E2_943 0.11 -0.9
1,109,943 + Pf6N2E2_943 0.11 -1.6
1,109,944 - Pf6N2E2_943 0.11 +1.0
1,109,977 - Pf6N2E2_943 0.14 -1.4
1,110,011 + Pf6N2E2_943 0.17 -0.1
1,110,119 - Pf6N2E2_943 0.28 -0.4
1,110,126 + Pf6N2E2_943 0.28 +0.3
1,110,127 - Pf6N2E2_943 0.29 -1.3
1,110,473 + Pf6N2E2_943 0.62 -1.4
1,110,474 - Pf6N2E2_943 0.62 -1.0
1,110,742 + Pf6N2E2_943 0.87 -0.2
1,110,873 - +1.6
1,110,891 + +1.9
1,110,897 + +0.4
1,111,039 + Pf6N2E2_944 0.22 +0.7
1,111,040 - Pf6N2E2_944 0.22 +1.6
1,111,041 + Pf6N2E2_944 0.22 -0.0
1,111,041 + Pf6N2E2_944 0.22 +0.2
1,111,042 - Pf6N2E2_944 0.23 +0.0
1,111,042 - Pf6N2E2_944 0.23 +0.5
1,111,047 + Pf6N2E2_944 0.24 -0.4
1,111,048 - Pf6N2E2_944 0.24 +0.5
1,111,048 - Pf6N2E2_944 0.24 +0.3
1,111,053 + +2.4
1,111,053 + Pf6N2E2_944 0.25 +0.4
1,111,054 - Pf6N2E2_944 0.26 +0.7
1,111,054 - Pf6N2E2_944 0.26 +1.6
1,111,054 - Pf6N2E2_944 0.26 -0.8
1,111,054 - Pf6N2E2_944 0.26 +0.1
1,111,054 - Pf6N2E2_944 0.26 -0.7
1,111,054 - Pf6N2E2_944 0.26 -1.0
1,111,080 + Pf6N2E2_944 0.32 -1.0
1,111,081 - Pf6N2E2_944 0.32 -0.0
1,111,081 - Pf6N2E2_944 0.32 +2.2
1,111,081 - Pf6N2E2_944 0.32 +0.6
1,111,232 + Pf6N2E2_944 0.70 -1.0
1,111,244 + Pf6N2E2_944 0.73 -1.0
1,111,244 + Pf6N2E2_944 0.73 +0.6
1,111,245 - Pf6N2E2_944 0.73 +1.4
1,111,245 - Pf6N2E2_944 0.73 -0.4
1,111,462 - -0.7
1,111,518 - +1.4
1,111,518 - +0.1
1,111,529 - +3.1
1,111,529 - -0.8
1,111,585 - -0.4
1,111,585 - -1.1
1,111,678 - +0.6
1,111,764 + +1.0
1,111,809 + +0.1
1,111,809 + +1.6
1,111,809 + +0.1
1,111,809 + +0.9
1,111,810 - -0.8

Or see this region's nucleotide sequence